RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 SATB1Q01826 763 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 TRIM25Q14258 630 aaKnown RBP16.79■□□□□ 0.28
USP28-208ENST00000540438 CLHC1Q8NHS4 586 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 LKAAEAR1Q8TD35 194 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 FUBP1Q96AE4 644 aaKnown RBP16.79■□□□□ 0.28
USP28-208ENST00000540438 SLCO4A1Q96BD0 722 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 FEM1CQ96JP0 617 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 BIRC8Q96P09 236 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 PLEKHG4BQ96PX9 1271 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 TRIB3Q96RU7 358 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 PAPOLBQ9NRJ5 636 aaKnown RBP16.79■□□□□ 0.28
USP28-208ENST00000540438 ZNHIT2Q9UHR6 403 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 AP4S1Q9Y587 144 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 HEMK1Q9Y5R4 338 aaPredicted RBP16.79■□□□□ 0.28
USP28-208ENST00000540438 C2orf81A6NN90 581 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 TRIM38O00635 465 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 NME4O00746 187 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 IGLV3-27P01718 113 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 HMGA1P17096 107 aaKnown RBP16.79■□□□□ 0.28
USP28-208ENST00000540438 OXTRP30559 389 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 CSKP41240 450 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 DGKQP52824 942 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 CTSL3PQ5NE16 218 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 RARS2Q5T160 578 aaKnown RBP16.79■□□□□ 0.28
USP28-208ENST00000540438 DET1Q7L5Y6 550 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 RAB44Q7Z6P3 723 aaPredicted RBP16.79■□□□□ 0.28
USP28-208ENST00000540438 SLC22A15Q8IZD6 547 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 OR10Q1Q8NGQ4 319 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 DDI1Q8WTU0 396 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 SKA2Q8WVK7 121 aaPredicted RBP16.79■□□□□ 0.28
USP28-208ENST00000540438 ANKRD27Q96NW4 1050 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 C17orf80Q9BSJ5 609 aa16.79■□□□□ 0.28
USP28-208ENST00000540438 MTX2O75431 263 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 BCAS2O75934 225 aaPredicted RBP16.78■□□□□ 0.28
USP28-208ENST00000540438 SQLEQ14534 574 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 PAGE3Q5JUK9 113 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 MILR1Q7Z6M3 343 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 TRPM5Q9NZQ8 1165 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 PRPF19Q9UMS4 504 aaKnown RBP16.78■□□□□ 0.28
USP28-208ENST00000540438 SLC4A7Q9Y6M7 1214 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 ANGPT2O15123 496 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 PCNAP12004 261 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 GPX3P22352 226 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 WEE1P30291 646 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 MAGEA11P43364 429 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 ZNF140P52738 457 aaPredicted RBP16.78■□□□□ 0.28
USP28-208ENST00000540438 STX5Q13190 355 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 OGFRL1Q5TC84 451 aaPredicted RBP16.78■□□□□ 0.28
USP28-208ENST00000540438 CXorf57Q6NSI4 855 aaKnown RBP16.78■□□□□ 0.28
USP28-208ENST00000540438 TSPAN33Q86UF1 283 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 NPAS4Q8IUM7 802 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 PSKH2Q96QS6 385 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 SPAG4Q9NPE6 437 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 FARSBQ9NSD9 589 aaKnown RBP16.78■□□□□ 0.28
USP28-208ENST00000540438 OLA1Q9NTK5 396 aaKnown RBP16.78■□□□□ 0.28
USP28-208ENST00000540438 INTS7Q9NVH2 962 aaKnown RBP16.78■□□□□ 0.28
USP28-208ENST00000540438 CD84Q9UIB8 345 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 PRSS21Q9Y6M0 314 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 SNX2O60749 519 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 CLDN7O95471 211 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 HK2P52789 917 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 RAD51Q06609 339 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 CDH18Q13634 790 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 ANKS3Q6ZW76 656 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 ZBTB46Q86UZ6 589 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 LRRC49Q8IUZ0 686 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 SLC22A9Q8IVM8 553 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 AFAP1L2Q8N4X5 818 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 NSUN3Q9H649 340 aaKnown RBP16.78■□□□□ 0.28
USP28-208ENST00000540438 TRMT6Q9UJA5 497 aaKnown RBP16.78■□□□□ 0.28
USP28-208ENST00000540438 LZTS1Q9Y250 596 aa16.78■□□□□ 0.28
USP28-208ENST00000540438 LIN7AO14910 233 aaPredicted RBP16.77■□□□□ 0.28
USP28-208ENST00000540438 GNAO1P09471 354 aa16.77■□□□□ 0.28
USP28-208ENST00000540438 CST5P28325 142 aaPredicted RBP16.77■□□□□ 0.28
USP28-208ENST00000540438 GSTT1P30711 240 aa16.77■□□□□ 0.28
USP28-208ENST00000540438 CTSOP43234 321 aaPredicted RBP16.77■□□□□ 0.28
USP28-208ENST00000540438 HSPA7P48741 367 aa16.77■□□□□ 0.28
USP28-208ENST00000540438 YBEYP58557 167 aaPredicted RBP16.77■□□□□ 0.28
USP28-208ENST00000540438 PLOD1Q02809 727 aaPredicted RBP16.77■□□□□ 0.28
USP28-208ENST00000540438 C6orf10Q5SRN2 563 aa16.77■□□□□ 0.28
USP28-208ENST00000540438 BBS5Q8N3I7 341 aa16.77■□□□□ 0.28
USP28-208ENST00000540438 PPM1MQ96MI6 270 aa16.77■□□□□ 0.28
USP28-208ENST00000540438 MGME1Q9BQP7 344 aa16.77■□□□□ 0.28
USP28-208ENST00000540438 HIPK3Q9H422 1215 aa16.77■□□□□ 0.28
USP28-208ENST00000540438 CAAP1Q9H8G2 361 aa16.77■□□□□ 0.28
USP28-208ENST00000540438 LIN28AQ9H9Z2 209 aaKnown RBP16.77■□□□□ 0.28
USP28-208ENST00000540438 ZFP14Q9HCL3 533 aa16.77■□□□□ 0.28
USP28-208ENST00000540438 ZNF334Q9HCZ1 680 aaPredicted RBP16.77■□□□□ 0.28
USP28-208ENST00000540438 TRIM24O15164 1050 aa16.77■□□□□ 0.27
USP28-208ENST00000540438 INPP4BO15327 924 aa16.77■□□□□ 0.27
USP28-208ENST00000540438 B3GALT4O96024 378 aa16.77■□□□□ 0.27
USP28-208ENST00000540438 LPOP22079 712 aaPredicted RBP16.77■□□□□ 0.27
USP28-208ENST00000540438 CNPY1Q3B7I2 92 aa16.77■□□□□ 0.27
USP28-208ENST00000540438 DNAJB7Q7Z6W7 309 aaPredicted RBP16.77■□□□□ 0.27
USP28-208ENST00000540438 FNDC5Q8NAU1 212 aa16.77■□□□□ 0.27
USP28-208ENST00000540438 KNL1Q8NG31 2342 aa16.77■□□□□ 0.27
USP28-208ENST00000540438 SEPT8Q92599 483 aa16.77■□□□□ 0.27
USP28-208ENST00000540438 CIPCQ9C0C6 399 aa16.77■□□□□ 0.27
USP28-208ENST00000540438 DDX18Q9NVP1 670 aaKnown RBP16.77■□□□□ 0.27
USP28-208ENST00000540438 IL37Q9NZH6 218 aa16.77■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms