RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 TCAF2A6NFQ2 919 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 TRIM49D1C9J1S8 452 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 K7ESM1 405 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 SLC31A1O15431 190 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 GM2AP17900 193 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 BGNP21810 368 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 HNRNPA2B1P22626 353 aaKnown RBP8.24□□□□□ -1.09
NEDD8-207ENST00000533242 AMPD1P23109 780 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 MAGEA3P43357 314 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 PDK2Q15119 407 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 DPYSL2Q16555 572 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 C3orf38Q5JPI3 329 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 RABGAP1LQ5R372 815 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 KIAA1614Q5VZ46 1190 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 NCBP2-AS2Q69YL0 99 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 CXorf57Q6NSI4 855 aaKnown RBP8.24□□□□□ -1.09
NEDD8-207ENST00000533242 UNC5AQ6ZN44 842 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 CCDC81Q6ZN84 652 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 GCNT7Q6ZNI0 430 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 FAM131BQ86XD5 332 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 CTAGE3PQ8IX95 158 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 GBP7Q8N8V2 638 aaPredicted RBP8.24□□□□□ -1.09
NEDD8-207ENST00000533242 OR13H1Q8NG92 308 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 TEKT4Q8WW24 435 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 CENPIQ92674 756 aaPredicted RBP8.24□□□□□ -1.09
NEDD8-207ENST00000533242 ALG14Q96F25 216 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 CSPG4P5Q96PW8 444 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 LRRC37BQ96QE4 947 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 MYOCQ99972 504 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 ZNF670Q9BS34 389 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 KCNK13Q9HB14 408 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 FBXO6Q9NRD1 293 aaPredicted RBP8.24□□□□□ -1.09
NEDD8-207ENST00000533242 DTLQ9NZJ0 730 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 PAK5Q9P286 719 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 AP4E1Q9UPM8 1137 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 CSNK1G3Q9Y6M4 447 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 CFAP46Q8IYW2 2715 aa8.24□□□□□ -1.09
NEDD8-207ENST00000533242 CDRT15L2A8MXV6 281 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 I6L893 689 aaPredicted RBP8.23□□□□□ -1.09
NEDD8-207ENST00000533242 IGLV3-25P01717 112 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 MT-ND3P03897 115 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 MYF5P13349 255 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 TGM2P21980 687 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 GMPRP36959 345 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 ACADSBP45954 432 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 HNRNPKP61978 463 aaKnown RBP eCLIP8.23□□□□□ -1.095e-7■□□□□ 9.7
NEDD8-207ENST00000533242 SLC18A2Q05940 514 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 OLIG2Q13516 323 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 RIPK1Q13546 671 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 DLG2Q15700 870 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 ZCCHC8Q6NZY4 707 aaKnown RBP8.23□□□□□ -1.09
NEDD8-207ENST00000533242 RBM44Q6ZP01 1051 aaKnown RBP8.23□□□□□ -1.09
NEDD8-207ENST00000533242 SLC26A9Q7LBE3 791 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 NLRP9Q7RTR0 991 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 CLEC14AQ86T13 490 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 MTDHQ86UE4 582 aaKnown RBP8.23□□□□□ -1.09
NEDD8-207ENST00000533242 KLK6Q92876 244 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 RNF34Q969K3 372 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 FAM149B1Q96BN6 582 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 SIGLEC10Q96LC7 697 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 OSBPL2Q9H1P3 480 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 MANSC1Q9H8J5 431 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 PPCSQ9HAB8 311 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 GPR27Q9NS67 375 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 ZC3H7BQ9UGR2 993 aaKnown RBP8.23□□□□□ -1.09
NEDD8-207ENST00000533242 ENTPD2Q9Y5L3 495 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 HEMK1Q9Y5R4 338 aaPredicted RBP8.23□□□□□ -1.09
NEDD8-207ENST00000533242 HS3ST3A1Q9Y663 406 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 SMG1Q96Q15 3661 aaKnown RBP8.23□□□□□ -1.09
NEDD8-207ENST00000533242 SYNJ2BP-COX16A0A087WUM0 186 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 A0A1W2PNU3 283 aaPredicted RBP8.23□□□□□ -1.09
NEDD8-207ENST00000533242 KCNU1A8MYU2 1149 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 H3BM21 787 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 TM9SF1O15321 606 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 MFSD11O43934 449 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 RFPL1O75677 317 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 INHBAP08476 426 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 F7P08709 466 aaPredicted RBP8.23□□□□□ -1.09
NEDD8-207ENST00000533242 MAGEA6P43360 314 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 SYPL2Q5VXT5 272 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 SMYD5Q6GMV2 418 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 KYAT3Q6YP21 454 aaKnown RBP8.23□□□□□ -1.09
NEDD8-207ENST00000533242 Q6ZVU0 165 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 EFL1Q7Z2Z2 1120 aaKnown RBP8.23□□□□□ -1.09
NEDD8-207ENST00000533242 TTC7BQ86TV6 843 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 CIR1Q86X95 450 aaPredicted RBP8.23□□□□□ -1.09
NEDD8-207ENST00000533242 VSIG1Q86XK7 387 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 MAP7D3Q8IWC1 876 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 SLC22A18ASQ8N1D0 253 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 TMIEQ8NEW7 156 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 MAGEC3Q8TD91 643 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 ARRDC3Q96B67 414 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 ATXN7L3BQ96GX2 97 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 OXNAD1Q96HP4 312 aaPredicted RBP8.23□□□□□ -1.09
NEDD8-207ENST00000533242 APOPT1Q96IL0 206 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 SRPK1Q96SB4 655 aaKnown RBP8.23□□□□□ -1.09
NEDD8-207ENST00000533242 MIPEPQ99797 713 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 FEM1AQ9BSK4 669 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 FAM117AQ9C073 453 aa8.23□□□□□ -1.09
NEDD8-207ENST00000533242 C20orf27Q9GZN8 174 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms