RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ATN1P54259 1190 aaPredicted RBP11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 MFSD10Q14728 455 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 POU4F3Q15319 338 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 VPS26BQ4G0F5 336 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 BRAT1Q6PJG6 821 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 ANKS3Q6ZW76 656 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 ENOSF1Q7L5Y1 443 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 PRSS42Q7Z5A4 293 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 STRA8Q7Z7C7 330 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 ZBTB33Q86T24 672 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 RETREG3Q86VR2 466 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 FANK1Q8TC84 345 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 YIPF6Q96EC8 236 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 KIFC1Q9BW19 673 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 FBRSL1Q9HCM7 1045 aaKnown RBP11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 TM9SF3Q9HD45 589 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 OGDHLQ9ULD0 1010 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 RIMKLBQ9ULI2 386 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 GRIP1Q9Y3R0 1128 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 U3KQV3 271 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 MN1Q10571 1320 aaPredicted RBP11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 SLCO1B7G3V0H7 640 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 FCER2P06734 321 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 ITGA2P17301 1181 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 MGAT1P26572 445 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 AVPR1AP37288 418 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 SLC25A11Q02978 314 aaKnown RBP11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 COX10Q12887 443 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 NOMO1Q15155 1222 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 LIPMQ5VYY2 423 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 LIPIQ6XZB0 460 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 BBS7Q8IWZ6 715 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 PJA1Q8NG27 643 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 RHNO1Q9BSD3 238 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 ASNSD1Q9NWL6 643 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 B3GNT2Q9NY97 397 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 DTLQ9NZJ0 730 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 NOSIPQ9Y314 301 aaKnown RBP11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 MYO18AQ92614 2054 aaKnown RBP11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 GPIP06744 558 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 ADORA3P0DMS8 318 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 BNC1Q01954 994 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 GABPAQ06546 454 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 KCNAB2Q13303 367 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 ORC1Q13415 861 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 PCBP1Q15365 356 aaKnown RBP eCLIP11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 AOC3Q16853 763 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 SOWAHCQ53LP3 525 aaPredicted RBP11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 FAM209BQ5JX69 171 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 VARS2Q5ST30 1063 aaKnown RBP11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 RPS27LQ71UM5 84 aaKnown RBP11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 ZNF534Q76KX8 674 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 AMER2Q8N7J2 671 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 RDH11Q8TC12 318 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 STON2Q8WXE9 905 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 PIGBQ92521 554 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 SDCBP2Q9H190 292 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 VPS33BQ9H267 617 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 MTMR10Q9NXD2 777 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 CD274Q9NZQ7 290 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 TJP2Q9UDY2 1190 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 SARDHQ9UL12 918 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 INVSQ9Y283 1065 aa11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 ZFC3H1O60293 1989 aaKnown RBP11.98□□□□□ -0.49
LIMCH1-213ENST00000511496 H3BQ06 376 aaPredicted RBP11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 MEIS2O14770 477 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 TBX3O15119 743 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 AIREO43918 545 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 HUS1O60921 280 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 OR5F1O95221 314 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 LCKP06239 509 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 CYP3A5P20815 502 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 YWHAQP27348 245 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 HIBADHP31937 336 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 GP5P40197 560 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 SQLEQ14534 574 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 ACOX1Q15067 660 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 BEND5Q7L4P6 421 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 PTERQ96BW5 349 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 ELMO2Q96JJ3 720 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 FAM213AQ9BRX8 229 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 RNF167Q9H6Y7 350 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 SPATA6Q9NWH7 488 aaPredicted RBP11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 TBC1D24Q9ULP9 559 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 USP22Q9UPT9 525 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 ZNF175Q9Y473 711 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 CNTNAP1P78357 1384 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 PPEF1O14829 653 aaPredicted RBP11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 ANGPTL1O95841 491 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 HLA-DRAP01903 254 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 DNAJB1P25685 340 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 HNF4AP41235 474 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 BLVRAP53004 296 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 PTCHD3Q3KNS1 767 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 FSTL4Q6MZW2 842 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 PLCZ1Q86YW0 608 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 KDM1BQ8NB78 822 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 ACVR1CQ8NER5 493 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 SLC2A14Q8TDB8 520 aa11.97□□□□□ -0.49
LIMCH1-213ENST00000511496 CAMKK2Q96RR4 588 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms