RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.8□□□□□ -0.52
CUX1-210ENST00000497815 OR4L1Q8NH43 312 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 FAM174AQ8TBP5 190 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 PYROXD1Q8WU10 500 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 BTN2A2Q8WVV5 523 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 PEX13Q92968 403 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 LRRC39Q96DD0 335 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 C9orf72Q96LT7 481 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 WDR92Q96MX6 357 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 VPS35Q96QK1 796 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 FMO2Q99518 471 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 C19orf43Q9BQ61 176 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 NAT9Q9BTE0 207 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 GTPBP2Q9BX10 602 aaKnown RBP11.8□□□□□ -0.52
CUX1-210ENST00000497815 FOXP3Q9BZS1 431 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 CAAP1Q9H8G2 361 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 ANKZF1Q9H8Y5 726 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 CAPN10Q9HC96 672 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 MRPL40Q9NQ50 206 aaKnown RBP11.8□□□□□ -0.52
CUX1-210ENST00000497815 CATSPERZQ9NTU4 200 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 C20orf96Q9NUD7 363 aaPredicted RBP11.8□□□□□ -0.52
CUX1-210ENST00000497815 DNAJC28Q9NX36 388 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.8□□□□□ -0.52
CUX1-210ENST00000497815 DOCK9Q9BZ29 2069 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 SPTY2D1-AS1A0A0U1RR47 76 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 ZCWPW2A0A1B0GU75 182 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 PROB1E7EW31 1015 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 TOR1BO14657 336 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 EIF3HO15372 352 aaKnown RBP eCLIP11.79□□□□□ -0.52
CUX1-210ENST00000497815 CD3EAPO15446 510 aaKnown RBP11.79□□□□□ -0.52
CUX1-210ENST00000497815 KELP23276 732 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 ARNTP27540 789 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 AKT1P31749 480 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 FOXN2P32314 431 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 MAGEA4P43358 317 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 TUBB4BP68371 445 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 THOC5Q13769 683 aaKnown RBP11.79□□□□□ -0.52
CUX1-210ENST00000497815 SEMA3AQ14563 771 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 TCEA2Q15560 299 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 LONRF1Q17RB8 773 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 GPR33Q49SQ1 333 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 KHDC1Q4VXA5 237 aaKnown RBP11.79□□□□□ -0.52
CUX1-210ENST00000497815 SPANXN3Q5MJ09 141 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 ARMC3Q5W041 872 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 KCTD16Q68DU8 428 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 KIAA0930Q6ICG6 404 aaPredicted RBP11.79□□□□□ -0.52
CUX1-210ENST00000497815 MACC1Q6ZN28 852 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 ASCL5Q7RTU5 278 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 LDB1Q86U70 411 aaPredicted RBP11.79□□□□□ -0.52
CUX1-210ENST00000497815 SERPINA9Q86WD7 417 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 DCP2Q8IU60 420 aaKnown RBP11.79□□□□□ -0.52
CUX1-210ENST00000497815 CCNJLQ8IV13 435 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 HID1Q8IV36 788 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 PIANPQ8IYJ0 282 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 NXPE1Q8N323 547 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 GPR161Q8N6U8 529 aaKnown RBP11.79□□□□□ -0.52
CUX1-210ENST00000497815 OR56A4Q8NGH8 313 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 OR2I1PQ8NGU4 316 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 DTX3LQ8TDB6 740 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 NAT14Q8WUY8 206 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 OR1E3Q8WZA6 343 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 RUBCNQ92622 972 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 TSACCQ96A04 125 aaPredicted RBP11.79□□□□□ -0.52
CUX1-210ENST00000497815 ULK4Q96C45 1275 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 PDXPQ96GD0 296 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 COX14Q96I36 57 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 FAM129AQ9BZQ8 928 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 OR2AG1Q9H205 316 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 PLAC1Q9HBJ0 212 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 FGF22Q9HCT0 170 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 PPANQ9NQ55 473 aaKnown RBP11.79□□□□□ -0.52
CUX1-210ENST00000497815 GPR27Q9NS67 375 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 SEMA4GQ9NTN9 838 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 MARCH4Q9P2E8 410 aaPredicted RBP11.79□□□□□ -0.52
CUX1-210ENST00000497815 KLQ9UEF7 1012 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 PRKAB1Q9Y478 270 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 FAM169AQ9Y6X4 670 aa11.79□□□□□ -0.52
CUX1-210ENST00000497815 ARHGAP33O14559 1287 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 TTC4O95801 387 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 CEACAM5P06731 702 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 SYPP08247 313 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 F7P08709 466 aaPredicted RBP11.78□□□□□ -0.52
CUX1-210ENST00000497815 HOXC4P09017 264 aaPredicted RBP11.78□□□□□ -0.52
CUX1-210ENST00000497815 ZNF806P0C7X5 589 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 MYBL2P10244 700 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 ERVK-10P10266 1014 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 ENGP17813 658 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 MSH3P20585 1137 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 SSTR1P30872 391 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 CTSKP43235 329 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 GNPDA1P46926 289 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 ARCN1P48444 511 aaKnown RBP11.78□□□□□ -0.52
CUX1-210ENST00000497815 ATXN3P54252 364 aaPredicted RBP11.78□□□□□ -0.52
CUX1-210ENST00000497815 SRP54P61011 504 aaKnown RBP11.78□□□□□ -0.52
CUX1-210ENST00000497815 IL9RQ01113 521 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 EIF2B5Q13144 721 aaKnown RBP11.78□□□□□ -0.52
CUX1-210ENST00000497815 NAA30Q147X3 362 aaPredicted RBP11.78□□□□□ -0.52
CUX1-210ENST00000497815 DBN1Q16643 649 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 ALG11Q2TAA5 492 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 HLA-BQ31612 363 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms