RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 ANOS1P23352 680 aa5.45□□□□□ -1.54
SF3B1-212ENST00000496458 ELF1P32519 619 aa5.45□□□□□ -1.54
SF3B1-212ENST00000496458 KRT9P35527 623 aa5.45□□□□□ -1.54
SF3B1-212ENST00000496458 BSGP35613 385 aa5.45□□□□□ -1.54
SF3B1-212ENST00000496458 COG7P83436 770 aa5.45□□□□□ -1.54
SF3B1-212ENST00000496458 GOLGA8DPQ0D2H9 430 aa5.45□□□□□ -1.54
SF3B1-212ENST00000496458 SIRPB2Q5JXA9 342 aa5.45□□□□□ -1.54
SF3B1-212ENST00000496458 FAM171BQ6P995 826 aa5.45□□□□□ -1.54
SF3B1-212ENST00000496458 CYP20A1Q6UW02 462 aa5.45□□□□□ -1.54
SF3B1-212ENST00000496458 MAP7D3Q8IWC1 876 aa5.45□□□□□ -1.54
SF3B1-212ENST00000496458 WDFY2Q96P53 400 aa5.45□□□□□ -1.54
SF3B1-212ENST00000496458 NEURL2Q9BR09 285 aa5.45□□□□□ -1.54
SF3B1-212ENST00000496458 POLR1BQ9H9Y6 1135 aa5.45□□□□□ -1.54
SF3B1-212ENST00000496458 CLIC4Q9Y696 253 aa5.45□□□□□ -1.54
SF3B1-212ENST00000496458 KCNE2Q9Y6J6 123 aa5.45□□□□□ -1.54
SF3B1-212ENST00000496458 TAF1P21675 1872 aa5.45□□□□□ -1.54
SF3B1-212ENST00000496458 PRSS47A8MTI9 375 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 ERVV-2B6SEH9 535 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 ANKRD28O15084 1053 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 JRKO75564 520 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 WDHD1O75717 1129 aaPredicted RBP5.44□□□□□ -1.54
SF3B1-212ENST00000496458 SLC25A12O75746 678 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 CLEC3BP05452 202 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 FAM106CPP0CH98 169 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 PLIN5Q00G26 463 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 CDC16Q13042 620 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 MYLK3Q32MK0 819 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 JAKMIP3Q5VZ66 844 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 PMS2CLQ68D20 193 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 ZNF449Q6P9G9 518 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 CPLX4Q7Z7G2 160 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 FRMD1Q8N878 549 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 OR52I2Q8NH67 350 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 LINGO1Q96FE5 620 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 PIGMQ9H3S5 423 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 COPG2Q9UBF2 871 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 STK39Q9UEW8 545 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 SCRIBQ14160 1630 aa5.44□□□□□ -1.54
SF3B1-212ENST00000496458 WDR81Q562E7 1941 aa5.43□□□□□ -1.54
SF3B1-212ENST00000496458 FAM237BA0A1B0GVD1 139 aa5.43□□□□□ -1.54
SF3B1-212ENST00000496458 FAM90A26D6RGX4 464 aa5.43□□□□□ -1.54
SF3B1-212ENST00000496458 ATP2A1O14983 1001 aa5.43□□□□□ -1.54
SF3B1-212ENST00000496458 KCNN4O15554 427 aa5.43□□□□□ -1.54
SF3B1-212ENST00000496458 KCNK5O95279 499 aa5.43□□□□□ -1.54
SF3B1-212ENST00000496458 TERF1P54274 439 aa5.43□□□□□ -1.54
SF3B1-212ENST00000496458 RPS3AP61247 264 aaKnown RBP5.43□□□□□ -1.54
SF3B1-212ENST00000496458 RBM39Q14498 530 aaKnown RBP5.43□□□□□ -1.54
SF3B1-212ENST00000496458 PNLIPRP3Q17RR3 467 aa5.43□□□□□ -1.54
SF3B1-212ENST00000496458 PAPD4Q6PIY7 484 aaKnown RBP5.43□□□□□ -1.54
SF3B1-212ENST00000496458 ZNF704Q6ZNC4 412 aaPredicted RBP5.43□□□□□ -1.54
SF3B1-212ENST00000496458 SEPT14Q6ZU15 432 aa5.43□□□□□ -1.54
SF3B1-212ENST00000496458 TMTC2Q8N394 836 aa5.43□□□□□ -1.54
SF3B1-212ENST00000496458 OR1J2Q8NGS2 313 aa5.43□□□□□ -1.54
SF3B1-212ENST00000496458 DNAAF4Q8WXU2 420 aa5.43□□□□□ -1.54
SF3B1-212ENST00000496458 IRAK4Q9NWZ3 460 aa5.43□□□□□ -1.54
SF3B1-212ENST00000496458 CWC15Q9P013 229 aaKnown RBP5.43□□□□□ -1.54
SF3B1-212ENST00000496458 ZCWPW2A0A1B0GU75 182 aa5.42□□□□□ -1.54
SF3B1-212ENST00000496458 FAM72CH0Y354 149 aa5.42□□□□□ -1.54
SF3B1-212ENST00000496458 EIF3DO15371 548 aaKnown RBP eCLIP5.42□□□□□ -1.54
SF3B1-212ENST00000496458 HSPA1AP0DMV8 641 aaKnown RBP5.42□□□□□ -1.54
SF3B1-212ENST00000496458 HSPA1BP0DMV9 641 aaKnown RBP5.42□□□□□ -1.54
SF3B1-212ENST00000496458 UGT1A1P22309 533 aa5.42□□□□□ -1.54
SF3B1-212ENST00000496458 PRCPP42785 496 aa5.42□□□□□ -1.54
SF3B1-212ENST00000496458 HOXA1P49639 335 aaPredicted RBP5.42□□□□□ -1.54
SF3B1-212ENST00000496458 LINC01547P58512 204 aaPredicted RBP5.42□□□□□ -1.54
SF3B1-212ENST00000496458 RUNX1T1Q06455 604 aa5.42□□□□□ -1.54
SF3B1-212ENST00000496458 PDE1CQ14123 709 aaPredicted RBP5.42□□□□□ -1.54
SF3B1-212ENST00000496458 KRTCAP3Q53RY4 240 aa5.42□□□□□ -1.54
SF3B1-212ENST00000496458 ZNF805Q5CZA5 627 aa5.42□□□□□ -1.54
SF3B1-212ENST00000496458 FAM72AQ5TYM5 149 aa5.42□□□□□ -1.54
SF3B1-212ENST00000496458 PLA2G4FQ68DD2 849 aa5.42□□□□□ -1.54
SF3B1-212ENST00000496458 FAM72DQ6L9T8 149 aa5.42□□□□□ -1.54
SF3B1-212ENST00000496458 SDCCAG8Q86SQ7 713 aaPredicted RBP5.42□□□□□ -1.54
SF3B1-212ENST00000496458 FAM72BQ86X60 149 aa5.42□□□□□ -1.54
SF3B1-212ENST00000496458 FOXP4Q8IVH2 680 aaPredicted RBP5.42□□□□□ -1.54
SF3B1-212ENST00000496458 TMEM255BQ8WV15 326 aa5.42□□□□□ -1.54
SF3B1-212ENST00000496458 SMC6Q96SB8 1091 aa5.42□□□□□ -1.54
SF3B1-212ENST00000496458 LRMDAQ9H2I8 198 aa5.42□□□□□ -1.54
SF3B1-212ENST00000496458 HCFC1R1Q9NWW0 138 aa5.42□□□□□ -1.54
SF3B1-212ENST00000496458 EIF4E1BA6NMX2 242 aaKnown RBP5.41□□□□□ -1.54
SF3B1-212ENST00000496458 H3BQ06 376 aaPredicted RBP5.41□□□□□ -1.54
SF3B1-212ENST00000496458 CCNDBP1O95273 360 aa5.41□□□□□ -1.54
SF3B1-212ENST00000496458 TBX18O95935 607 aa5.41□□□□□ -1.54
SF3B1-212ENST00000496458 TIMP3P35625 211 aa5.41□□□□□ -1.54
SF3B1-212ENST00000496458 GLIPR1P48060 266 aa5.41□□□□□ -1.54
SF3B1-212ENST00000496458 ZBED6P86452 979 aa5.41□□□□□ -1.54
SF3B1-212ENST00000496458 MED22Q15528 200 aa5.41□□□□□ -1.54
SF3B1-212ENST00000496458 KRTAP27-1Q3LI81 207 aa5.41□□□□□ -1.54
SF3B1-212ENST00000496458 EPHX4Q8IUS5 362 aa5.41□□□□□ -1.54
SF3B1-212ENST00000496458 UTP15Q8TED0 518 aaKnown RBP5.41□□□□□ -1.54
SF3B1-212ENST00000496458 FBXO17Q96EF6 278 aa5.41□□□□□ -1.54
SF3B1-212ENST00000496458 SIL1Q9H173 461 aa5.41□□□□□ -1.54
SF3B1-212ENST00000496458 RRP7BPQ9NSQ0 103 aa5.41□□□□□ -1.54
SF3B1-212ENST00000496458 MAP3K20Q9NYL2 800 aaKnown RBP5.41□□□□□ -1.54
SF3B1-212ENST00000496458 MARCH4Q9P2E8 410 aaPredicted RBP5.41□□□□□ -1.54
SF3B1-212ENST00000496458 POLG2Q9UHN1 485 aa5.41□□□□□ -1.54
SF3B1-212ENST00000496458 R3HDM2Q9Y2K5 976 aaKnown RBP5.41□□□□□ -1.54
SF3B1-212ENST00000496458 BICRAQ9NZM4 1560 aa5.41□□□□□ -1.54
SF3B1-212ENST00000496458 A0A0U1RQG5 324 aaPredicted RBP5.4□□□□□ -1.54
SF3B1-212ENST00000496458 KANSL1LA0AUZ9 987 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms