RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 C1orf50Q9BV19 199 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 BPIFA1Q9NP55 256 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 PNPLA3Q9NST1 481 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 INTS10Q9NVR2 710 aaKnown RBP17.83■□□□□ 0.45
VIM-206ENST00000487938 ZNF225Q9UK10 706 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 PCDHGC4Q9Y5F7 938 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 TANC1Q9C0D5 1861 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 ARPC2O15144 300 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 HNRNPRO43390 633 aaKnown RBP17.83■□□□□ 0.44
VIM-206ENST00000487938 VNN2O95498 520 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 HSD17B1P14061 328 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 IDO1P14902 403 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 SH3BGRP55822 239 aaPredicted RBP17.83■□□□□ 0.44
VIM-206ENST00000487938 UFM1P61960 85 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 RPS24P62847 133 aaKnown RBP17.83■□□□□ 0.44
VIM-206ENST00000487938 NFYCQ13952 458 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 INPP5AQ14642 412 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 ADRM1Q16186 407 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 RBBP7Q16576 425 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 CCSAPQ6IQ19 270 aaPredicted RBP17.83■□□□□ 0.44
VIM-206ENST00000487938 PIANPQ8IYJ0 282 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 CMTR2Q8IYT2 770 aaKnown RBP17.83■□□□□ 0.44
VIM-206ENST00000487938 SIDT2Q8NBJ9 832 aaKnown RBP17.83■□□□□ 0.44
VIM-206ENST00000487938 TFAP2CQ92754 450 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 RMND5BQ96G75 393 aaPredicted RBP17.83■□□□□ 0.44
VIM-206ENST00000487938 ZNF599Q96NL3 588 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 MGME1Q9BQP7 344 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 HGH1Q9BTY7 390 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 CINPQ9BW66 212 aaPredicted RBP17.83■□□□□ 0.44
VIM-206ENST00000487938 PIF1Q9H611 641 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 SLAMF8Q9P0V8 285 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 HCSTQ9UBK5 93 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 PCDHA9Q9Y5H5 950 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 SQORQ9Y6N5 450 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 VWA8A3KMH1 1905 aa17.83■□□□□ 0.44
VIM-206ENST00000487938 MTMR11A4FU01 709 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 ASPDHA6ND91 283 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 AQP12BA6NM10 295 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 NIPSNAP2O75323 286 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 CYBBP04839 570 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 CDH2P19022 906 aaPredicted RBP17.82■□□□□ 0.44
VIM-206ENST00000487938 PSMA4P25789 261 aaKnown RBP17.82■□□□□ 0.44
VIM-206ENST00000487938 BTG3Q14201 252 aaPredicted RBP17.82■□□□□ 0.44
VIM-206ENST00000487938 PSAPL1Q6NUJ1 521 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 EPHX4Q8IUS5 362 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 AQP12AQ8IXF9 295 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 BIRC8Q96P09 236 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 ANKRD60Q9BZ19 345 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 TRIM15Q9C019 465 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 ACTR3BQ9P1U1 418 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 ASB1Q9Y576 335 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 ANKRD33BA6NCL7 494 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 NT5C1B-RDH14C9J2C7 533 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 DLGAP1O14490 977 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 SYN3O14994 580 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 INPP4BO15327 924 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 SEC24DO94855 1032 aaPredicted RBP17.82■□□□□ 0.44
VIM-206ENST00000487938 ZNF23P17027 643 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 GATMP50440 423 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 RPS6KA3P51812 740 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 KCNK10P57789 538 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 RING1Q06587 406 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 BBS5Q8N3I7 341 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 LPCAT1Q8NF37 534 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 EEF1AKMT1Q8WVE0 214 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 TMEM125Q96AQ2 219 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 TMEM74Q96NL1 305 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 LIN28AQ9H9Z2 209 aaKnown RBP17.82■□□□□ 0.44
VIM-206ENST00000487938 SARS2Q9NP81 518 aaKnown RBP17.82■□□□□ 0.44
VIM-206ENST00000487938 SMOXQ9NWM0 555 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 UBA2Q9UBT2 640 aaPredicted RBP17.82■□□□□ 0.44
VIM-206ENST00000487938 SEPT3Q9UH03 358 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 TSR3Q9UJK0 312 aaKnown RBP17.82■□□□□ 0.44
VIM-206ENST00000487938 USP22Q9UPT9 525 aa17.82■□□□□ 0.44
VIM-206ENST00000487938 RNF103-CHMP3A0A140T963 221 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 A0A1W2PP18 115 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 INSIG1O15503 277 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 PRLP01236 227 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 FASP25445 335 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 HK3P52790 923 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 NKX3-2P78367 333 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 MRPL58Q14197 206 aaKnown RBP17.81■□□□□ 0.44
VIM-206ENST00000487938 CYP51A1Q16850 503 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 HABP4Q5JVS0 413 aaKnown RBP17.81■□□□□ 0.44
VIM-206ENST00000487938 LCN8Q6JVE9 175 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 AFTPHQ6ULP2 937 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 ARHGAP22Q7Z5H3 698 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 CAMK1DQ8IU85 385 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 ADGRG5Q8IZF4 528 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 FIBCD1Q8N539 461 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 OR2T11Q8NH01 316 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.81■□□□□ 0.44
VIM-206ENST00000487938 CDK15Q96Q40 435 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 AGPAT4Q9NRZ5 378 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 FKBPLQ9UIM3 349 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 RIMKLBQ9ULI2 386 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 CROCCQ5TZA2 2017 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 C2orf81A6NN90 581 aa17.81■□□□□ 0.44
VIM-206ENST00000487938 FAM155AB1AL88 458 aaPredicted RBP17.81■□□□□ 0.44
VIM-206ENST00000487938 CA12O43570 354 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms