RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 WDR38Q5JTN6 314 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 DCST1Q5T197 706 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 EEF1A1P5Q5VTE0 462 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 CDC73Q6P1J9 531 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 CACNA2D4Q7Z3S7 1137 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 CPXCR1Q8N123 301 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 FCAMRQ8WWV6 532 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 SAAL1Q96ER3 474 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 MMABQ96EY8 250 aaPredicted RBP3.05□□□□□ -1.92
VPS50-216ENST00000484954 PERPQ96FX8 193 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 NEURL2Q9BR09 285 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 RBM4Q9BWF3 364 aaKnown RBP3.05□□□□□ -1.92
VPS50-216ENST00000484954 TFB2MQ9H5Q4 396 aaKnown RBP3.05□□□□□ -1.92
VPS50-216ENST00000484954 PRKRIP1Q9H875 184 aaPredicted RBP3.05□□□□□ -1.92
VPS50-216ENST00000484954 FKRPQ9H9S5 495 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 MARCH4Q9P2E8 410 aaPredicted RBP3.05□□□□□ -1.92
VPS50-216ENST00000484954 CRYL1Q9Y2S2 319 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 OR5K3A6NET4 321 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 TTC36A6NLP5 189 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 SYNGR3O43761 229 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 PRKNO60260 465 aaPredicted RBP3.04□□□□□ -1.92
VPS50-216ENST00000484954 TBX6O95947 436 aaPredicted RBP3.04□□□□□ -1.92
VPS50-216ENST00000484954 UGT1A1P22309 533 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 PBX3P40426 434 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 MMP14P50281 582 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 PLIN5Q00G26 463 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 TMEM115Q12893 351 aaPredicted RBP3.04□□□□□ -1.92
VPS50-216ENST00000484954 FOXD4Q12950 439 aaPredicted RBP3.04□□□□□ -1.92
VPS50-216ENST00000484954 OLIG2Q13516 323 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 FRG1Q14331 258 aaKnown RBP3.04□□□□□ -1.92
VPS50-216ENST00000484954 SLC35E4Q6ICL7 350 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 LCN10Q6JVE6 187 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 INO80CQ6PI98 192 aaPredicted RBP3.04□□□□□ -1.92
VPS50-216ENST00000484954 PAPD4Q6PIY7 484 aaKnown RBP3.04□□□□□ -1.92
VPS50-216ENST00000484954 ATF7IPQ6VMQ6 1270 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 Q75L30 129 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 NOTCH2NLQ7Z3S9 236 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 PIWIL4Q7Z3Z4 852 aaKnown RBP3.04□□□□□ -1.92
VPS50-216ENST00000484954 THAP6Q8TBB0 222 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 METTL6Q8TCB7 284 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 KCNG4Q8TDN1 519 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 FSD1Q9BTV5 496 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 EGLN1Q9GZT9 426 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 LRMDAQ9H2I8 198 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 PIGMQ9H3S5 423 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 UPF2Q9HAU5 1272 aaKnown RBP3.04□□□□□ -1.92
VPS50-216ENST00000484954 SLC52A3Q9NQ40 469 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 FAM118AQ9NWS6 357 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 ZNF624Q9P2J8 865 aaPredicted RBP3.04□□□□□ -1.92
VPS50-216ENST00000484954 COPG2Q9UBF2 871 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 CLIC4Q9Y696 253 aa3.04□□□□□ -1.92
VPS50-216ENST00000484954 A0A1B0GU03 582 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 A6NLC8 198 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 SMIM1B2RUZ4 78 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 HS3ST1O14792 307 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 ATP2A1O14983 1001 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 KCNN4O15554 427 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 CIDEAO60543 219 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 PAGE4O60829 102 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 KRTAP5-8O75690 187 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 BAG4O95429 457 aaKnown RBP3.03□□□□□ -1.92
VPS50-216ENST00000484954 UBL4AP11441 157 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 ATP1A3P13637 1013 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 XBP1P17861 261 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 UBA1P22314 1058 aaKnown RBP3.03□□□□□ -1.92
VPS50-216ENST00000484954 HOXC9P31274 260 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 AHRP35869 848 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 ERVK11-1P61568 191 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 GAGE5Q13069 117 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 GAGE6Q13070 117 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 MAD2L1Q13257 205 aaPredicted RBP3.03□□□□□ -1.92
VPS50-216ENST00000484954 DCTN2Q13561 401 aaKnown RBP3.03□□□□□ -1.92
VPS50-216ENST00000484954 CCNYL2Q5T2Q4 361 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 NSUN5P2Q63ZY6 315 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 ACAD10Q6JQN1 1059 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 SLC27A1Q6PCB7 646 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 PLXDC2Q6UX71 529 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 ZNF704Q6ZNC4 412 aaPredicted RBP3.03□□□□□ -1.92
VPS50-216ENST00000484954 C15orf39Q6ZRI6 1047 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 ARMC8Q8IUR7 673 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 STPG4Q8N801 248 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 TM9SF4Q92544 642 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 INTS12Q96CB8 462 aaKnown RBP3.03□□□□□ -1.92
VPS50-216ENST00000484954 LGALS12Q96DT0 336 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 SENP5Q96HI0 755 aaPredicted RBP3.03□□□□□ -1.92
VPS50-216ENST00000484954 C17orf77Q96MU5 243 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 STRA6Q9BX79 667 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 POLR1BQ9H9Y6 1135 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 TRPC7Q9HCX4 862 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 TCP11L1Q9NUJ3 509 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 MAP3K20Q9NYL2 800 aaKnown RBP3.03□□□□□ -1.92
VPS50-216ENST00000484954 PDP2Q9P2J9 529 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 OR14J1Q9UGF5 321 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 POLG2Q9UHN1 485 aa3.03□□□□□ -1.92
VPS50-216ENST00000484954 CCDC196A0A1B0GTZ2 297 aa3.02□□□□□ -1.93
VPS50-216ENST00000484954 ERI2A8K979 691 aaKnown RBP3.02□□□□□ -1.93
VPS50-216ENST00000484954 EIF3CLB5ME19 914 aaKnown RBP3.02□□□□□ -1.93
VPS50-216ENST00000484954 BLOC1S5-TXNDC5H3BN57 136 aa3.02□□□□□ -1.93
VPS50-216ENST00000484954 ICAM1P05362 532 aa3.02□□□□□ -1.93
VPS50-216ENST00000484954 CD48P09326 243 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms