RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 NT5DC3Q86UY8 548 aa21.34■■□□□ 1.01
USP40-215ENST00000484528 DTX1Q86Y01 620 aa21.34■■□□□ 1.01
USP40-215ENST00000484528 RAVER1Q8IY67 606 aaKnown RBP21.34■■□□□ 1.01
USP40-215ENST00000484528 SPATA22Q8NHS9 363 aa21.34■■□□□ 1.01
USP40-215ENST00000484528 ART4Q93070 314 aa21.34■■□□□ 1.01
USP40-215ENST00000484528 AHCYL2Q96HN2 611 aaKnown RBP21.34■■□□□ 1.01
USP40-215ENST00000484528 OR2AG1Q9H205 316 aa21.34■■□□□ 1.01
USP40-215ENST00000484528 ATXN10Q9UBB4 475 aa21.34■■□□□ 1.01
USP40-215ENST00000484528 ZNF711Q9Y462 761 aa21.34■■□□□ 1.01
USP40-215ENST00000484528 PCDHGA4Q9Y5G9 962 aa21.34■■□□□ 1.01
USP40-215ENST00000484528 MT-CYBP00156 380 aaPredicted RBP21.33■■□□□ 1.01
USP40-215ENST00000484528 MAPK9P45984 424 aa21.33■■□□□ 1.01
USP40-215ENST00000484528 GPLD1P80108 840 aa21.33■■□□□ 1.01
USP40-215ENST00000484528 TRA2AQ13595 282 aaKnown RBP eCLIP21.33■■□□□ 1.01
USP40-215ENST00000484528 ZNF569Q5MCW4 686 aa21.33■■□□□ 1.01
USP40-215ENST00000484528 MFSD7Q6UXD7 560 aa21.33■■□□□ 1.01
USP40-215ENST00000484528 FAM129CQ86XR2 697 aa21.33■■□□□ 1.01
USP40-215ENST00000484528 AGBL5Q8NDL9 886 aa21.33■■□□□ 1.01
USP40-215ENST00000484528 GPR26Q8NDV2 337 aa21.33■■□□□ 1.01
USP40-215ENST00000484528 OR10G6Q8NH81 332 aa21.33■■□□□ 1.01
USP40-215ENST00000484528 EXTL1Q92935 676 aa21.33■■□□□ 1.01
USP40-215ENST00000484528 MED8Q96G25 268 aa21.33■■□□□ 1.01
USP40-215ENST00000484528 TAAR9Q96RI9 348 aa21.33■■□□□ 1.01
USP40-215ENST00000484528 TSPY26PQ9H489 355 aa21.33■■□□□ 1.01
USP40-215ENST00000484528 OCIAD1Q9NX40 245 aa21.33■■□□□ 1.01
USP40-215ENST00000484528 SAE1Q9UBE0 346 aaPredicted RBP21.33■■□□□ 1.01
USP40-215ENST00000484528 A8MU76 341 aa21.32■■□□□ 1
USP40-215ENST00000484528 GRID2O43424 1007 aa21.32■■□□□ 1
USP40-215ENST00000484528 SPOPO43791 374 aa21.32■■□□□ 1
USP40-215ENST00000484528 DUX1O43812 170 aa21.32■■□□□ 1
USP40-215ENST00000484528 ZNF8P17098 575 aaPredicted RBP21.32■■□□□ 1
USP40-215ENST00000484528 CD82P27701 267 aa21.32■■□□□ 1
USP40-215ENST00000484528 CYP4F2P78329 520 aa21.32■■□□□ 1
USP40-215ENST00000484528 CDK18Q07002 472 aa21.32■■□□□ 1
USP40-215ENST00000484528 SQSTM1Q13501 440 aa21.32■■□□□ 1
USP40-215ENST00000484528 PLA2G4EQ3MJ16 856 aa21.32■■□□□ 1
USP40-215ENST00000484528 TMEM71Q6P5X7 295 aa21.32■■□□□ 1
USP40-215ENST00000484528 IYDQ6PHW0 289 aa21.32■■□□□ 1
USP40-215ENST00000484528 CRTC3Q6UUV7 619 aa21.32■■□□□ 1
USP40-215ENST00000484528 VSIG1Q86XK7 387 aa21.32■■□□□ 1
USP40-215ENST00000484528 RHOT1Q8IXI2 618 aa21.32■■□□□ 1
USP40-215ENST00000484528 EXD3Q8N9H8 876 aa21.32■■□□□ 1
USP40-215ENST00000484528 GPR63Q9BZJ6 419 aa21.32■■□□□ 1
USP40-215ENST00000484528 SLC25A51Q9H1U9 297 aa21.32■■□□□ 1
USP40-215ENST00000484528 CARD9Q9H257 536 aa21.32■■□□□ 1
USP40-215ENST00000484528 OSGEPL1Q9H4B0 414 aa21.32■■□□□ 1
USP40-215ENST00000484528 RMI1Q9H9A7 625 aa21.32■■□□□ 1
USP40-215ENST00000484528 SARS2Q9NP81 518 aaKnown RBP21.32■■□□□ 1
USP40-215ENST00000484528 UBP1Q9NZI7 540 aa21.32■■□□□ 1
USP40-215ENST00000484528 B3GALT1Q9Y5Z6 326 aa21.32■■□□□ 1
USP40-215ENST00000484528 ZNF106Q9H2Y7 1883 aaKnown RBP21.31■■□□□ 1
USP40-215ENST00000484528 RGSL1A5PLK6 1076 aa21.31■■□□□ 1
USP40-215ENST00000484528 A6NCN8 305 aa21.31■■□□□ 1
USP40-215ENST00000484528 EFCAB7A8K855 629 aa21.31■■□□□ 1
USP40-215ENST00000484528 STMND1H3BQB6 276 aa21.31■■□□□ 1
USP40-215ENST00000484528 NUAK1O60285 661 aa21.31■■□□□ 1
USP40-215ENST00000484528 PMPCBO75439 489 aa21.31■■□□□ 1
USP40-215ENST00000484528 SLC25A14O95258 325 aaPredicted RBP21.31■■□□□ 1
USP40-215ENST00000484528 ZFXP17010 805 aaPredicted RBP21.31■■□□□ 1
USP40-215ENST00000484528 COMTP21964 271 aa21.31■■□□□ 1
USP40-215ENST00000484528 LINC00303Q3SY05 128 aa21.31■■□□□ 1
USP40-215ENST00000484528 LRRC38Q5VT99 294 aa21.31■■□□□ 1
USP40-215ENST00000484528 CCDC112Q8NEF3 446 aa21.31■■□□□ 1
USP40-215ENST00000484528 DPYSL5Q9BPU6 564 aa21.31■■□□□ 1
USP40-215ENST00000484528 HERPUD2Q9BSE4 406 aa21.31■■□□□ 1
USP40-215ENST00000484528 GOLPH3Q9H4A6 298 aa21.31■■□□□ 1
USP40-215ENST00000484528 STN1Q9H668 368 aaKnown RBP21.31■■□□□ 1
USP40-215ENST00000484528 GLOD4Q9HC38 313 aa21.31■■□□□ 1
USP40-215ENST00000484528 PRDM8Q9NQV8 689 aa21.31■■□□□ 1
USP40-215ENST00000484528 SLC39A1Q9NY26 324 aa21.31■■□□□ 1
USP40-215ENST00000484528 DDX56Q9NY93 547 aaKnown RBP21.31■■□□□ 1
USP40-215ENST00000484528 SPO11Q9Y5K1 396 aa21.31■■□□□ 1
USP40-215ENST00000484528 IQCJ-SCHIP1C9J366 451 aaPredicted RBP21.3■■□□□ 1
USP40-215ENST00000484528 F5H423 210 aaPredicted RBP21.3■■□□□ 1
USP40-215ENST00000484528 PYCARD-AS1I3L0S3 204 aa21.3■■□□□ 1
USP40-215ENST00000484528 MTX2O75431 263 aa21.3■■□□□ 1
USP40-215ENST00000484528 F3P13726 295 aa21.3■■□□□ 1
USP40-215ENST00000484528 PECAM1P16284 738 aaPredicted RBP21.3■■□□□ 1
USP40-215ENST00000484528 PTPN3P26045 913 aa21.3■■□□□ 1
USP40-215ENST00000484528 NOMO1Q15155 1222 aa21.3■■□□□ 1
USP40-215ENST00000484528 SKOR2Q2VWA4 1001 aaPredicted RBP21.3■■□□□ 1
USP40-215ENST00000484528 KAZNQ674X7 775 aa21.3■■□□□ 1
USP40-215ENST00000484528 TMC3Q7Z5M5 1100 aa21.3■■□□□ 1
USP40-215ENST00000484528 PHYKPLQ8IUZ5 450 aa21.3■■□□□ 1
USP40-215ENST00000484528 NCSTNQ92542 709 aa21.3■■□□□ 1
USP40-215ENST00000484528 TADA1Q96BN2 335 aa21.3■■□□□ 1
USP40-215ENST00000484528 ZSCAN5AQ9BUG6 496 aa21.3■■□□□ 1
USP40-215ENST00000484528 TBC1D10AQ9BXI6 508 aa21.3■■□□□ 1
USP40-215ENST00000484528 B3GNT4Q9C0J1 378 aa21.3■■□□□ 1
USP40-215ENST00000484528 MAGEE1Q9HCI5 957 aa21.3■■□□□ 1
USP40-215ENST00000484528 KLC4Q9NSK0 619 aa21.3■■□□□ 1
USP40-215ENST00000484528 KLHL3Q9UH77 587 aa21.3■■□□□ 1
USP40-215ENST00000484528 PCDHGA3Q9Y5H0 932 aa21.3■■□□□ 1
USP40-215ENST00000484528 ADGRG1Q9Y653 693 aa21.3■■□□□ 1
USP40-215ENST00000484528 BOD1L1Q8NFC6 3051 aa21.3■■□□□ 1
USP40-215ENST00000484528 A0A0A6YYK5 440 aaPredicted RBP21.29■■□□□ 1
USP40-215ENST00000484528 AURKAO14965 403 aa21.29■■□□□ 1
USP40-215ENST00000484528 BPIP17213 487 aa21.29■■□□□ 1
USP40-215ENST00000484528 CDKN2BP42772 138 aa21.29■■□□□ 1
USP40-215ENST00000484528 SLC1A1P43005 524 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms