RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 PPWD1Q96BP3 646 aaKnown RBP18.96■□□□□ 0.63
VIM-203ENST00000469543 TTLL2Q9BWV7 592 aa18.96■□□□□ 0.63
VIM-203ENST00000469543 EPS15L1Q9UBC2 864 aa18.96■□□□□ 0.63
VIM-203ENST00000469543 CLDN11O75508 207 aa18.96■□□□□ 0.63
VIM-203ENST00000469543 OGNP20774 298 aaKnown RBP18.96■□□□□ 0.63
VIM-203ENST00000469543 ARL1P40616 181 aaPredicted RBP18.96■□□□□ 0.63
VIM-203ENST00000469543 RHDQ02161 417 aa18.96■□□□□ 0.63
VIM-203ENST00000469543 HMBOX1Q6NT76 420 aa18.96■□□□□ 0.63
VIM-203ENST00000469543 SPPL2CQ8IUH8 684 aa18.96■□□□□ 0.63
VIM-203ENST00000469543 BBS5Q8N3I7 341 aa18.96■□□□□ 0.63
VIM-203ENST00000469543 OR2T11Q8NH01 316 aa18.96■□□□□ 0.63
VIM-203ENST00000469543 STON2Q8WXE9 905 aa18.96■□□□□ 0.63
VIM-203ENST00000469543 ZNF599Q96NL3 588 aa18.96■□□□□ 0.63
VIM-203ENST00000469543 HMX1Q9NP08 348 aaPredicted RBP18.96■□□□□ 0.63
VIM-203ENST00000469543 USP22Q9UPT9 525 aa18.96■□□□□ 0.63
VIM-203ENST00000469543 LCHNA4D1U4 455 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 CRCPO75575 148 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 ATP6V1B2P21281 511 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 LPOP22079 712 aaPredicted RBP18.95■□□□□ 0.62
VIM-203ENST00000469543 RPL10P27635 214 aaKnown RBP18.95■□□□□ 0.62
VIM-203ENST00000469543 MYBPC1Q00872 1141 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 RAD51Q06609 339 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 GRM2Q14416 872 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 CNPY1Q3B7I2 92 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 FUT11Q495W5 492 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 RABL3Q5HYI8 236 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 SLC8B1Q6J4K2 584 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 EP400NLQ6ZTU2 488 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 MYO1HQ8N1T3 1032 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 CLDN19Q8N6F1 224 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 DIS3LQ8TF46 1054 aaKnown RBP18.95■□□□□ 0.62
VIM-203ENST00000469543 LINGO1Q96FE5 620 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 BTBD9Q96Q07 612 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 DERL2Q9GZP9 239 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 ELAC1Q9H777 363 aaKnown RBP18.95■□□□□ 0.62
VIM-203ENST00000469543 EIF2B4Q9UI10 523 aaKnown RBP18.95■□□□□ 0.62
VIM-203ENST00000469543 SARDHQ9UL12 918 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 SNUPNO95149 360 aaKnown RBP18.95■□□□□ 0.62
VIM-203ENST00000469543 ALDH1A1P00352 501 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 KPNA1P52294 538 aaPredicted RBP18.95■□□□□ 0.62
VIM-203ENST00000469543 XIAPP98170 497 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 LCP2Q13094 533 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 RPS6KA2Q15349 733 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 TAF12Q16514 161 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 C8orf82Q6P1X6 216 aaPredicted RBP18.95■□□□□ 0.62
VIM-203ENST00000469543 CAMK1DQ8IU85 385 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 ST13P4Q8IZP2 240 aaPredicted RBP18.95■□□□□ 0.62
VIM-203ENST00000469543 CDYL2Q8N8U2 506 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 PLEKHG4BQ96PX9 1271 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 SYTL2Q9HCH5 934 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 SUCOQ9UBS9 1254 aaKnown RBP18.95■□□□□ 0.62
VIM-203ENST00000469543 AURKCQ9UQB9 309 aa18.95■□□□□ 0.62
VIM-203ENST00000469543 H0Y626 953 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 H7C4K7 107 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 STX7O15400 261 aaKnown RBP18.94■□□□□ 0.62
VIM-203ENST00000469543 BAIAP3O94812 1187 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 GSTT1P30711 240 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 BTG3Q14201 252 aaPredicted RBP18.94■□□□□ 0.62
VIM-203ENST00000469543 MAPRE2Q15555 327 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 AFTPHQ6ULP2 937 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 SLC15A3Q8IY34 581 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 CD200R1Q8TD46 325 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 PEX13Q92968 403 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 PRPF18Q99633 342 aaKnown RBP18.94■□□□□ 0.62
VIM-203ENST00000469543 HGH1Q9BTY7 390 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 INTS10Q9NVR2 710 aaKnown RBP18.94■□□□□ 0.62
VIM-203ENST00000469543 LZTS1Q9Y250 596 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 ILVBLA1L0T0 632 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 FXYD1O00168 92 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 SMAD6O43541 496 aaKnown RBP18.94■□□□□ 0.62
VIM-203ENST00000469543 DENRO43583 198 aaKnown RBP18.94■□□□□ 0.62
VIM-203ENST00000469543 TBL1XO60907 577 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 PENKP01210 267 aaPredicted RBP18.94■□□□□ 0.62
VIM-203ENST00000469543 SMIM18P0DKX4 95 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 PKMP14618 531 aaKnown RBP18.94■□□□□ 0.62
VIM-203ENST00000469543 UFM1P61960 85 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 PLIN5Q00G26 463 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 ANKS6Q68DC2 871 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 MIER2Q8N344 545 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 SEPT8Q92599 483 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 BOCQ9BWV1 1114 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 SPATA16Q9BXB7 569 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 ABCG8Q9H221 673 aa18.94■□□□□ 0.62
VIM-203ENST00000469543 OR4F21O95013 312 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 TXNDC8Q6A555 127 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 LYSMD3Q7Z3D4 306 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 DHFR2Q86XF0 187 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 ADCY4Q8NFM4 1077 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 DLG3Q92796 817 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 TMEM74Q96NL1 305 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 CMTM6Q9NX76 183 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 CLEC4EQ9ULY5 219 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 PHF24Q9UPV7 400 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 OAS3Q9Y6K5 1087 aaKnown RBP18.93■□□□□ 0.62
VIM-203ENST00000469543 MYO7AQ13402 2215 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 A0A1B0GVM2 712 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 MTHFD1P11586 935 aaKnown RBP18.93■□□□□ 0.62
VIM-203ENST00000469543 NCK1P16333 377 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 PSMD8P48556 350 aa18.93■□□□□ 0.62
VIM-203ENST00000469543 SMAD3P84022 425 aaKnown RBP18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms