RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 CD84Q9UIB8 345 aa17.92■□□□□ 0.46
SQSTM1-204ENST00000453046 CHKBQ9Y259 395 aa17.92■□□□□ 0.46
SQSTM1-204ENST00000453046 CCDC187A0A096LP49 1063 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 A0A0J9YYE9 177 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 A0A0U1RQS6 177 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 NDC80O14777 642 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 KCNN4O15554 427 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 TRBC1P01850 177 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 KRT14P02533 472 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 CEACAM5P06731 702 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 GLB1P16278 677 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 ZNF30P17039 623 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 GNPDA1P46926 289 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 GUCY2DQ02846 1103 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 TLE3Q04726 772 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 CUL1Q13616 776 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 NAA30Q147X3 362 aaPredicted RBP17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 P3H1Q32P28 736 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 C14orf28Q4W4Y0 310 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 SOWAHCQ53LP3 525 aaPredicted RBP17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 DUPD1Q68J44 220 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 OGFOD3Q6PK18 319 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 DOK6Q6PKX4 331 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 TECPR1Q7Z6L1 1165 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 KCNE4Q8WWG9 221 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 HIC2Q96JB3 615 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 SLC46A1Q96NT5 459 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 TDRD1Q9BXT4 1180 aaKnown RBP17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 GSDMCQ9BYG8 508 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 FAM129AQ9BZQ8 928 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 STRADBQ9C0K7 418 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 LRRN3Q9H3W5 708 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 EPB41L5Q9HCM4 733 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 ASCL3Q9NQ33 180 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 LRIT1Q9P2V4 623 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 ASIC3Q9UHC3 531 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 RAB21Q9UL25 225 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 PCDHGA8Q9Y5G5 932 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 LRP4O75096 1905 aa17.91■□□□□ 0.46
SQSTM1-204ENST00000453046 TMX2-CTNND1H3BSU7 103 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 STK10O94804 968 aaKnown RBP17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 IFNB1P01574 187 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 JCHAINP01591 159 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 HLA-DQB2P05538 268 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 TEAD1P28347 426 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 RBL1P28749 1068 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 DRG2P55039 364 aaKnown RBP17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 GDF10P55107 478 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 DPTQ07507 201 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 BIRC2Q13490 618 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 CERCAMQ5T4B2 595 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 ALG1LQ6GMV1 187 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 IGF2-ASQ6U949 168 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 CCNJLQ8IV13 435 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 EIF1ADQ8N9N8 165 aaKnown RBP17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 FAM71DQ8N9W8 422 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 LPCAT1Q8NF37 534 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 HTR3CQ8WXA8 447 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 SMIM14Q96QK8 99 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 PRORYQ9H606 182 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 FAM114A2Q9NRY5 505 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 TRNAU1APQ9NX07 287 aaKnown RBP17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 APPL1Q9UKG1 709 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 SUFUQ9UMX1 484 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 ATRXP46100 2492 aa17.9■□□□□ 0.46
SQSTM1-204ENST00000453046 IGSF10Q6WRI0 2623 aa17.89■□□□□ 0.46
SQSTM1-204ENST00000453046 A0A1W2PNU3 283 aaPredicted RBP17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 A0A1W2PQM1 296 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 D6RAR5 112 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 KCNK1O00180 336 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 NOBOXO60393 691 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 TNFSF15O95150 251 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 PNLIPP16233 465 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 PDX1P52945 283 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 INHBCP55103 352 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 CXADRP78310 365 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 PTSQ03393 145 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 NIPAL4Q0D2K0 466 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 AP1B1Q10567 949 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 PEX6Q13608 980 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 C4orf22Q6V702 233 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 B3GNT8Q7Z7M8 397 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 SFTPA2Q8IWL1 248 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 ARRDC2Q8TBH0 407 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 GPBAR1Q8TDU6 330 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 ZDHHC1Q8WTX9 485 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 SCAMP4Q969E2 229 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 LIN37Q96GY3 246 aaPredicted RBP17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 SNF8Q96H20 258 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 TMEM74Q96NL1 305 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 VAT1Q99536 393 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 FRMD8Q9BZ67 464 aaPredicted RBP17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 FOXP3Q9BZS1 431 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 ABCG8Q9H221 673 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 SPATS2LQ9NUQ6 558 aaKnown RBP17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 PAK5Q9P286 719 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 RNF215Q9Y6U7 377 aa17.89■□□□□ 0.45
SQSTM1-204ENST00000453046 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.88■□□□□ 0.45
SQSTM1-204ENST00000453046 C5orf60A6NFR6 353 aa17.88■□□□□ 0.45
SQSTM1-204ENST00000453046 CAPN8A6NHC0 703 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms