RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 ASAH2Q9NR71 780 aa14.09□□□□□ -0.15
LIMD1-202ENST00000440097 NCKIPSDQ9NZQ3 722 aa14.09□□□□□ -0.15
LIMD1-202ENST00000440097 CXXC1Q9P0U4 656 aaPredicted RBP14.09□□□□□ -0.15
LIMD1-202ENST00000440097 PRRC2BQ5JSZ5 2229 aaKnown RBP14.09□□□□□ -0.15
LIMD1-202ENST00000440097 TRAV19A0A0A6YYK7 116 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 ANKRD66B4E2M5 251 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 NDUFS3O75489 264 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 XRCC1P18887 633 aaPredicted RBP14.08□□□□□ -0.16
LIMD1-202ENST00000440097 TFEBP19484 476 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 PRDX6P30041 224 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 THOP1P52888 689 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 ATXN3P54252 364 aaPredicted RBP14.08□□□□□ -0.16
LIMD1-202ENST00000440097 CBX3Q13185 183 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 PDAP1Q13442 181 aaKnown RBP14.08□□□□□ -0.16
LIMD1-202ENST00000440097 NXNQ6DKJ4 435 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 FAM45BPQ6NSW5 357 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 APCDD1Q8J025 514 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 CATSPER1Q8NEC5 780 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 ADCY4Q8NFM4 1077 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 RIN3Q8TB24 985 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 FNDC8Q8TC99 324 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 FAM45AQ8TCE6 357 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 LENG8Q96PV6 779 aaPredicted RBP14.08□□□□□ -0.16
LIMD1-202ENST00000440097 PKP2Q99959 881 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 C2orf49Q9BVC5 232 aaPredicted RBP14.08□□□□□ -0.16
LIMD1-202ENST00000440097 IGSF5Q9NSI5 407 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 GTSE1Q9NYZ3 720 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 FAM50BQ9Y247 325 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 RAP2CQ9Y3L5 183 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 INSL6Q9Y581 213 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 STX7O15400 261 aaKnown RBP14.08□□□□□ -0.16
LIMD1-202ENST00000440097 SUPT3HO75486 399 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 GLUD1P00367 558 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 PRLP01236 227 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 HSPA8P11142 646 aaKnown RBP14.08□□□□□ -0.16
LIMD1-202ENST00000440097 CES1P23141 567 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 SERPINB5P36952 375 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 RPL14P50914 215 aaKnown RBP14.08□□□□□ -0.16
LIMD1-202ENST00000440097 TRAF2Q12933 501 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 TAF1AQ15573 450 aaPredicted RBP14.08□□□□□ -0.16
LIMD1-202ENST00000440097 SLC9B1Q4ZJI4 515 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 FAM219BQ5XKK7 198 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 SEL1L3Q68CR1 1132 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 TXNDC5Q8NBS9 432 aaKnown RBP14.08□□□□□ -0.16
LIMD1-202ENST00000440097 NUF2Q9BZD4 464 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 HCFC1R1Q9NWW0 138 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 RSL24D1Q9UHA3 163 aaKnown RBP14.08□□□□□ -0.16
LIMD1-202ENST00000440097 STOML2Q9UJZ1 356 aa14.08□□□□□ -0.16
LIMD1-202ENST00000440097 LILRB3O75022 631 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 LATS1O95835 1130 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 CD160O95971 181 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 HNRNPLP14866 589 aaKnown RBP eCLIP14.07□□□□□ -0.161e-8■□□□□ 8.8
LIMD1-202ENST00000440097 CTPS1P17812 591 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 LPOP22079 712 aaPredicted RBP14.07□□□□□ -0.16
LIMD1-202ENST00000440097 ATP5F1P24539 256 aaPredicted RBP14.07□□□□□ -0.16
LIMD1-202ENST00000440097 FMO4P31512 558 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 CTNNB1P35222 781 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 CLCN2P51788 898 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 ZRANB3Q5FWF4 1079 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 RETSATQ6NUM9 610 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 ZNF783Q6ZMS7 281 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 MAPK15Q8TD08 544 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 PEX13Q92968 403 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 TMIGD2Q96BF3 282 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 CDRT15Q96T59 188 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 EMILIN2Q9BXX0 1053 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 WDR55Q9H6Y2 383 aaPredicted RBP14.07□□□□□ -0.16
LIMD1-202ENST00000440097 NLE1Q9NVX2 485 aaPredicted RBP14.07□□□□□ -0.16
LIMD1-202ENST00000440097 CHD5Q8TDI0 1954 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 LTBP2Q14767 1821 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 HIDE1A8MVS5 230 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 SRP72O76094 671 aaKnown RBP14.07□□□□□ -0.16
LIMD1-202ENST00000440097 RBP1P09455 135 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 DNAJB1P25685 340 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 EPHA3P29320 983 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 STC1P52823 247 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 PRKAA2P54646 552 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 ERVFC1P60507 584 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 ACVR1Q04771 509 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 PRKAA1Q13131 559 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 PPM1LQ5SGD2 360 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 AFTPHQ6ULP2 937 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 RNF148Q8N7C7 305 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 ZBTB8BQ8NAP8 495 aaPredicted RBP14.07□□□□□ -0.16
LIMD1-202ENST00000440097 BADQ92934 168 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 ARMC5Q96C12 935 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 GPR63Q9BZJ6 419 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 TCF7L2Q9NQB0 619 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 POLR3BQ9NW08 1133 aaPredicted RBP14.07□□□□□ -0.16
LIMD1-202ENST00000440097 ZDHHC2Q9UIJ5 367 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 FKBPLQ9UIM3 349 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 FAF1Q9UNN5 650 aaPredicted RBP14.07□□□□□ -0.16
LIMD1-202ENST00000440097 SH3GLB1Q9Y371 365 aa14.07□□□□□ -0.16
LIMD1-202ENST00000440097 TARM1B6A8C7 271 aa14.06□□□□□ -0.16
LIMD1-202ENST00000440097 TLL1O43897 1013 aa14.06□□□□□ -0.16
LIMD1-202ENST00000440097 RHOBTB1O94844 696 aa14.06□□□□□ -0.16
LIMD1-202ENST00000440097 OLFM2O95897 454 aa14.06□□□□□ -0.16
LIMD1-202ENST00000440097 ZNF140P52738 457 aaPredicted RBP14.06□□□□□ -0.16
LIMD1-202ENST00000440097 PKNOX1P55347 436 aa14.06□□□□□ -0.16
LIMD1-202ENST00000440097 CREB5Q02930 508 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms