RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 APOBEC1P41238 236 aaKnown RBP3.49□□□□□ -1.85
VPS41-207ENST00000439468 MSH2P43246 934 aa3.49□□□□□ -1.85
VPS41-207ENST00000439468 MRPS5P82675 430 aaKnown RBP3.49□□□□□ -1.85
VPS41-207ENST00000439468 SPOCK1Q08629 439 aa3.49□□□□□ -1.85
VPS41-207ENST00000439468 GRSF1Q12849 480 aaKnown RBP eCLIP3.49□□□□□ -1.85
VPS41-207ENST00000439468 PLCB4Q15147 1175 aa3.49□□□□□ -1.85
VPS41-207ENST00000439468 HLFQ16534 295 aa3.49□□□□□ -1.85
VPS41-207ENST00000439468 DENND5BQ6ZUT9 1274 aa3.49□□□□□ -1.85
VPS41-207ENST00000439468 CREB3L2Q70SY1 520 aa3.49□□□□□ -1.85
VPS41-207ENST00000439468 RASGEF1CQ8N431 466 aa3.49□□□□□ -1.85
VPS41-207ENST00000439468 PCDH20Q8N6Y1 951 aaKnown RBP3.49□□□□□ -1.85
VPS41-207ENST00000439468 ACVR1CQ8NER5 493 aa3.49□□□□□ -1.85
VPS41-207ENST00000439468 TMED6Q8WW62 240 aa3.49□□□□□ -1.85
VPS41-207ENST00000439468 FEM1CQ96JP0 617 aa3.49□□□□□ -1.85
VPS41-207ENST00000439468 FAM84BQ96KN1 310 aaPredicted RBP3.49□□□□□ -1.85
VPS41-207ENST00000439468 GCNAQ96QF7 691 aa3.49□□□□□ -1.85
VPS41-207ENST00000439468 LTB4R2Q9NPC1 389 aa3.49□□□□□ -1.85
VPS41-207ENST00000439468 CD93Q9NPY3 652 aa3.49□□□□□ -1.85
VPS41-207ENST00000439468 ARHGEF38Q9NXL2 777 aa3.49□□□□□ -1.85
VPS41-207ENST00000439468 MRPL15Q9P015 296 aaKnown RBP3.49□□□□□ -1.85
VPS41-207ENST00000439468 SEC63Q9UGP8 760 aaKnown RBP3.49□□□□□ -1.85
VPS41-207ENST00000439468 CHORDC1Q9UHD1 332 aaPredicted RBP3.49□□□□□ -1.85
VPS41-207ENST00000439468 AGO1Q9UL18 857 aaKnown RBP3.49□□□□□ -1.85
VPS41-207ENST00000439468 KCNS2Q9ULS6 477 aa3.49□□□□□ -1.85
VPS41-207ENST00000439468 PLAGL1Q9UM63 463 aa3.49□□□□□ -1.85
VPS41-207ENST00000439468 B3GALT5Q9Y2C3 310 aa3.49□□□□□ -1.85
VPS41-207ENST00000439468 BICRAQ9NZM4 1560 aa3.49□□□□□ -1.85
VPS41-207ENST00000439468 IGLV5-52A0A0A0MRZ9 124 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 CPED1A4D0V7 1026 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 CDRT15L2A8MXV6 281 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 MITFO75030 526 aaPredicted RBP3.48□□□□□ -1.85
VPS41-207ENST00000439468 GPC4O75487 556 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 SERPINI2O75830 405 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 ZWINTO95229 277 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 GLUD1P00367 558 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 AFPP02771 609 aaKnown RBP3.48□□□□□ -1.85
VPS41-207ENST00000439468 HIST1H2ABP04908 130 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 NR2F1P10589 423 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 ZNF12P17014 697 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 TRIM21P19474 475 aaKnown RBP3.48□□□□□ -1.85
VPS41-207ENST00000439468 HIST1H2ADP20671 130 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 GLUD2P49448 558 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 MMP14P50281 582 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 ART1P52961 327 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 HNRNPH2P55795 449 aaKnown RBP3.48□□□□□ -1.85
VPS41-207ENST00000439468 TMF1P82094 1093 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 MRPS34P82930 218 aaKnown RBP3.48□□□□□ -1.85
VPS41-207ENST00000439468 PCGF3Q3KNV8 242 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 AMZ1Q400G9 498 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 SETMARQ53H47 684 aaPredicted RBP3.48□□□□□ -1.85
VPS41-207ENST00000439468 TDRD12Q587J7 1177 aaKnown RBP3.48□□□□□ -1.85
VPS41-207ENST00000439468 XKR9Q5GH70 373 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 HIST3H2AQ7L7L0 130 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 NRROSQ86YC3 692 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 CHERPQ8IWX8 916 aaKnown RBP3.48□□□□□ -1.85
VPS41-207ENST00000439468 ZBTB8BQ8NAP8 495 aaPredicted RBP3.48□□□□□ -1.85
VPS41-207ENST00000439468 KCTD6Q8NC69 237 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 GSDMBQ8TAX9 411 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 DUSP19Q8WTR2 217 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 LRRC59Q96AG4 307 aaKnown RBP3.48□□□□□ -1.85
VPS41-207ENST00000439468 SCMH1Q96GD3 660 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 KRTAP2-2Q9BYT5 123 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 EPB41L5Q9HCM4 733 aa3.48□□□□□ -1.85
VPS41-207ENST00000439468 IFITM10A6NMD0 228 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 PLOD3O60568 738 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 RSL1D1O76021 490 aaKnown RBP3.47□□□□□ -1.85
VPS41-207ENST00000439468 CLDN14O95500 239 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 BCL10O95999 233 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 IL11P20809 199 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 SAT1P21673 171 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 UBA1P22314 1058 aaKnown RBP3.47□□□□□ -1.85
VPS41-207ENST00000439468 HOXA13P31271 388 aaPredicted RBP3.47□□□□□ -1.85
VPS41-207ENST00000439468 HOXC9P31274 260 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 GPR143P51810 404 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 PPP5CP53041 499 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 GAS1P54826 345 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 CSNK2A1P68400 391 aaPredicted RBP3.47□□□□□ -1.85
VPS41-207ENST00000439468 RPL36AP83881 106 aaKnown RBP3.47□□□□□ -1.85
VPS41-207ENST00000439468 SREBF2Q12772 1141 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 TRAF2Q12933 501 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 KCNC3Q14003 757 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 KCNT1Q5JUK3 1230 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 RARS2Q5T160 578 aaKnown RBP3.47□□□□□ -1.85
VPS41-207ENST00000439468 GARNL3Q5VVW2 1013 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 RGMBQ6NW40 437 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 RPUSD3Q6P087 351 aaKnown RBP3.47□□□□□ -1.85
VPS41-207ENST00000439468 RHBDF2Q6PJF5 856 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 ATG9AQ7Z3C6 839 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 CCDC190Q86UF4 302 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 CEP97Q8IW35 865 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 CLIP4Q8N3C7 705 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 CSNK2A3Q8NEV1 391 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 OR1J2Q8NGS2 313 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 OR5R1Q8NH85 324 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 SPATA3Q8NHX4 192 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 LMO3Q8TAP4 145 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 ZFAND2BQ8WV99 257 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 SLC44A1Q8WWI5 657 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 C3orf30Q96M34 536 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 MTERF1Q99551 399 aaKnown RBP3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms