RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ZDHHC18Q9NUE0 388 aa9.77□□□□□ -0.85
USP54-205ENST00000424265 BFARQ9NZS9 450 aa9.77□□□□□ -0.85
USP54-205ENST00000424265 RNF103-CHMP3A0A140T963 221 aa9.77□□□□□ -0.85
USP54-205ENST00000424265 TMEM191CA6NGB0 347 aa9.77□□□□□ -0.85
USP54-205ENST00000424265 H0YJX3 145 aa9.77□□□□□ -0.85
USP54-205ENST00000424265 ANXA9O76027 345 aa9.77□□□□□ -0.85
USP54-205ENST00000424265 HMBSP08397 361 aa9.77□□□□□ -0.85
USP54-205ENST00000424265 FAAP100Q0VG06 881 aa9.77□□□□□ -0.85
USP54-205ENST00000424265 TTC39BQ5VTQ0 682 aaPredicted RBP9.77□□□□□ -0.85
USP54-205ENST00000424265 C16orf89Q6UX73 402 aa9.77□□□□□ -0.85
USP54-205ENST00000424265 MIB1Q86YT6 1006 aa9.77□□□□□ -0.85
USP54-205ENST00000424265 GALNT13Q8IUC8 556 aa9.77□□□□□ -0.85
USP54-205ENST00000424265 RNF135Q8IUD6 432 aa9.77□□□□□ -0.85
USP54-205ENST00000424265 AADATQ8N5Z0 425 aa9.77□□□□□ -0.85
USP54-205ENST00000424265 ENKURQ8TC29 256 aa9.77□□□□□ -0.85
USP54-205ENST00000424265 TUBGCP3Q96CW5 907 aa9.77□□□□□ -0.85
USP54-205ENST00000424265 ZNF670Q9BS34 389 aa9.77□□□□□ -0.85
USP54-205ENST00000424265 NMUR2Q9GZQ4 415 aa9.77□□□□□ -0.85
USP54-205ENST00000424265 RPF2Q9H7B2 306 aaKnown RBP9.77□□□□□ -0.85
USP54-205ENST00000424265 WDR70Q9NW82 654 aa9.77□□□□□ -0.85
USP54-205ENST00000424265 NT5C1B-RDH14C9J2C7 533 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 H3BMQ9 156 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 M0QZQ0 153 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 DFFAO00273 331 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 KELP23276 732 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 SERPINB5P36952 375 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 ATXN3P54252 364 aaPredicted RBP9.76□□□□□ -0.85
USP54-205ENST00000424265 PLPP4Q5VZY2 271 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 BSPRYQ5W0U4 402 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 KRT74Q7RTS7 529 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 LINC00523Q86TU6 105 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 NT5DC3Q86UY8 548 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 XYLT1Q86Y38 959 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 LMO3Q8TAP4 145 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 TXNDC15Q96J42 360 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 C9orf72Q96LT7 481 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 RIPOR3Q96MK2 946 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 COG8Q96MW5 612 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 TDRD1Q9BXT4 1180 aaKnown RBP9.76□□□□□ -0.85
USP54-205ENST00000424265 TMEM9Q9P0T7 183 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 FNIP2Q9P278 1114 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 PSMC3IPQ9P2W1 217 aaPredicted RBP9.76□□□□□ -0.85
USP54-205ENST00000424265 CDC14AQ9UNH5 594 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 SAC3D1A6NKF1 404 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 ACOX3O15254 700 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 STX7O15400 261 aaKnown RBP9.76□□□□□ -0.85
USP54-205ENST00000424265 CXCL10P02778 98 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 PROCP04070 461 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 XKR4Q5GH76 650 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 OGFRL1Q5TC84 451 aaPredicted RBP9.76□□□□□ -0.85
USP54-205ENST00000424265 UNC5AQ6ZN44 842 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 FBXW8Q8N3Y1 598 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 TDRD5Q8NAT2 981 aaKnown RBP9.76□□□□□ -0.85
USP54-205ENST00000424265 OSGEPQ9NPF4 335 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 TLR9Q9NR96 1032 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 MARCOQ9UEW3 520 aaPredicted RBP9.76□□□□□ -0.85
USP54-205ENST00000424265 TESMINQ9Y4I5 508 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 OTOFQ9HC10 1997 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 CCDC195A0A1B0GUA6 201 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 C3orf70A6NLC5 250 aaPredicted RBP9.76□□□□□ -0.85
USP54-205ENST00000424265 H0Y626 953 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 ARHGAP33O14559 1287 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 SCO2O43819 266 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 KPNA2P52292 529 aaKnown RBP9.76□□□□□ -0.85
USP54-205ENST00000424265 PCDH1Q08174 1060 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 NAB1Q13506 487 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 ADGRE1Q14246 886 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 PTPN20Q4JDL3 420 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 AMIGO1Q86WK6 493 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 ARID3BQ8IVW6 561 aaPredicted RBP9.76□□□□□ -0.85
USP54-205ENST00000424265 COLGALT2Q8IYK4 626 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 FAM47BQ8NA70 645 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 MCCC2Q9HCC0 563 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 KCNK4Q9NYG8 393 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 TBX21Q9UL17 535 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 MRPS23Q9Y3D9 190 aaKnown RBP9.76□□□□□ -0.85
USP54-205ENST00000424265 TRAF6Q9Y4K3 522 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 OR6C65A6NJZ3 312 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 OAZ2O95190 189 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 ATE1O95260 518 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 IRF1P10914 325 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 UNGP13051 313 aaPredicted RBP9.76□□□□□ -0.85
USP54-205ENST00000424265 ITGA2P17301 1181 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 MIPP30301 263 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 SP140Q13342 867 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 ART3Q13508 389 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 EFR3AQ14156 821 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 PAGE2BQ5JRK9 111 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 FAM91A1Q658Y4 838 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 ANKRD26P1Q6NSI1 321 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 FAM131BQ86XD5 332 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 EMC1Q8N766 993 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 TOP1MTQ969P6 601 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 ALKBH8Q96BT7 664 aaKnown RBP9.76□□□□□ -0.85
USP54-205ENST00000424265 PLD4Q96BZ4 506 aa9.76□□□□□ -0.85
USP54-205ENST00000424265 PI4K2BG5E9Z4 385 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 WBP4O75554 376 aaKnown RBP9.75□□□□□ -0.85
USP54-205ENST00000424265 FGF18O76093 207 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 IL10P22301 178 aa9.75□□□□□ -0.85
USP54-205ENST00000424265 SEPHS1P49903 392 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms