RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 DDA1Q9BW61 102 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 ZMYND15Q9H091 742 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 ADNPQ9H2P0 1102 aa12.81□□□□□ -0.36
LINC00339-202ENST00000416769 AKAP7Q9P0M2 348 aaPredicted RBP12.81□□□□□ -0.36
LINC00339-202ENST00000416769 OAS3Q9Y6K5 1087 aaKnown RBP12.81□□□□□ -0.36
LINC00339-202ENST00000416769 GRID2IPA4D2P6 1211 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 CLEC18AA5D8T8 446 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 PDE2AO00408 941 aaPredicted RBP12.8□□□□□ -0.36
LINC00339-202ENST00000416769 MAFKO60675 156 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 ZNF28P17035 718 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 COMTP21964 271 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 CASRP41180 1078 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 MAPK9P45984 424 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 GPR3P46089 330 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 GPR1P46091 355 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 CCR10P46092 362 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 PPM1FP49593 454 aaPredicted RBP12.8□□□□□ -0.36
LINC00339-202ENST00000416769 POLR2LP62875 67 aaKnown RBP12.8□□□□□ -0.36
LINC00339-202ENST00000416769 CDC20Q12834 499 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 RFTN1Q14699 578 aaPredicted RBP12.8□□□□□ -0.36
LINC00339-202ENST00000416769 BOLA3Q53S33 107 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 C16orf46Q6P387 395 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 CLEC18BQ6UXF7 455 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 TMEM135Q86UB9 458 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 CLEC18CQ8NCF0 446 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 TRIM58Q8NG06 486 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 SCARF2Q96GP6 870 aaPredicted RBP12.8□□□□□ -0.36
LINC00339-202ENST00000416769 ALS2CR12Q96Q35 445 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 MCCC1Q96RQ3 725 aaPredicted RBP12.8□□□□□ -0.36
LINC00339-202ENST00000416769 B3GNT4Q9C0J1 378 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 CDH19Q9H159 772 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 GPN2Q9H9Y4 310 aaPredicted RBP12.8□□□□□ -0.36
LINC00339-202ENST00000416769 ARFGAP3Q9NP61 516 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 TBC1D29Q9UFV1 150 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 AMFRQ9UKV5 643 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 KCNK6Q9Y257 313 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 TEX15Q9BXT5 2789 aa12.8□□□□□ -0.36
LINC00339-202ENST00000416769 TNRC6AQ8NDV7 1962 aaKnown RBP12.8□□□□□ -0.36
LINC00339-202ENST00000416769 RP1L1Q8IWN7 2480 aaPredicted RBP12.79□□□□□ -0.36
LINC00339-202ENST00000416769 ZNF891A8MT65 544 aaPredicted RBP12.79□□□□□ -0.36
LINC00339-202ENST00000416769 B4E171 279 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 PRPSAP2O60256 369 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 KIF5CO60282 957 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 SOCS5O75159 536 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 FURINP09958 794 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 HTR7P34969 479 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 TSPAN7P41732 249 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 GFERP55789 205 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 PTSQ03393 145 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 SQSTM1Q13501 440 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 TRA2AQ13595 282 aaKnown RBP eCLIP12.79□□□□□ -0.36
LINC00339-202ENST00000416769 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.79□□□□□ -0.36
LINC00339-202ENST00000416769 ZNF648Q5T619 568 aaPredicted RBP12.79□□□□□ -0.36
LINC00339-202ENST00000416769 DCAF12Q5T6F0 453 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 LRRC38Q5VT99 294 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 TMEM71Q6P5X7 295 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 ARHGAP22Q7Z5H3 698 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 NT5DC3Q86UY8 548 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 CPNE8Q86YQ8 564 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 PSTKQ8IV42 348 aaKnown RBP12.79□□□□□ -0.36
LINC00339-202ENST00000416769 SFRP1Q8N474 314 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 C9orf43Q8TAL5 461 aaPredicted RBP12.79□□□□□ -0.36
LINC00339-202ENST00000416769 SPOCK2Q92563 424 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 HSPH1Q92598 858 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 AP2M1Q96CW1 435 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 ABHD17AQ96GS6 310 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 SLC45A3Q96JT2 553 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 WDR24Q96S15 920 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 RIOK2Q9BVS4 552 aaKnown RBP12.79□□□□□ -0.36
LINC00339-202ENST00000416769 TBC1D10AQ9BXI6 508 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 ZWILCHQ9H900 591 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 PDP2Q9P2J9 529 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 PHTF1Q9UMS5 762 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 MAN2B2Q9Y2E5 1009 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 CAPN6Q9Y6Q1 641 aa12.79□□□□□ -0.36
LINC00339-202ENST00000416769 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.78□□□□□ -0.36
LINC00339-202ENST00000416769 MTSS1O43312 755 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 SPOPO43791 374 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 DNAJC6O75061 913 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 STK17BO94768 372 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 KRT7P08729 469 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 CYP2A6P11509 494 aaPredicted RBP12.78□□□□□ -0.36
LINC00339-202ENST00000416769 ACP5P13686 325 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 MSNP26038 577 aaKnown RBP12.78□□□□□ -0.36
LINC00339-202ENST00000416769 SSR1P43307 286 aaKnown RBP12.78□□□□□ -0.36
LINC00339-202ENST00000416769 FASLGP48023 281 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 RENBPP51606 427 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 TAS2R40P59535 323 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 MC2RQ01718 297 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 DSC2Q02487 901 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 SLC25A11Q02978 314 aaKnown RBP12.78□□□□□ -0.36
LINC00339-202ENST00000416769 MMRN1Q13201 1228 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 CLPPQ16740 277 aaPredicted RBP12.78□□□□□ -0.36
LINC00339-202ENST00000416769 ADAMTSL4Q6UY14 1074 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 PEX26Q7Z412 305 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 POLNQ7Z5Q5 900 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 RHOT1Q8IXI2 618 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 NLGN4XQ8N0W4 816 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 NLGN4YQ8NFZ3 816 aaPredicted RBP12.78□□□□□ -0.36
LINC00339-202ENST00000416769 TEKT4Q8WW24 435 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms