RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 EIF4EBP2Q13542 120 aaPredicted RBP13.3□□□□□ -0.28
VPS54-203ENST00000409558 FRG1Q14331 258 aaKnown RBP13.3□□□□□ -0.28
VPS54-203ENST00000409558 PARP15Q460N3 678 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 KIAA0408Q6ZU52 694 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 STAG3L4Q8TBR4 150 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 PYCR2Q96C36 320 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 C1orf74Q96LT6 269 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 CCDC28BQ9BUN5 200 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 SLC25A23Q9BV35 468 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 INTS7Q9NVH2 962 aaKnown RBP13.3□□□□□ -0.28
VPS54-203ENST00000409558 FOXD2O60548 495 aaPredicted RBP13.29□□□□□ -0.28
VPS54-203ENST00000409558 VPS26AO75436 327 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 GNAO1P09471 354 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 HLA-DPA1P20036 260 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 HOXC13P31276 330 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 SATB1Q01826 763 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 GPR17Q13304 367 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 SLC5A9Q2M3M2 681 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 SLC2A7Q6PXP3 512 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 CCDC126Q96EE4 140 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 MPP4Q96JB8 637 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 AARSD1Q9BTE6 412 aaKnown RBP13.29□□□□□ -0.28
VPS54-203ENST00000409558 TMEM161AQ9NX61 479 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 KANSL1LA0AUZ9 987 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 FAM155AB1AL88 458 aaPredicted RBP13.29□□□□□ -0.28
VPS54-203ENST00000409558 EOMESO95936 686 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 ATP5BP06576 529 aaKnown RBP13.29□□□□□ -0.28
VPS54-203ENST00000409558 ARHGEF7Q14155 803 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 SYVN1Q86TM6 617 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 CBR4Q8N4T8 237 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 TMIGD2Q96BF3 282 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 FUBP3Q96I24 572 aaKnown RBP eCLIP13.29□□□□□ -0.28
VPS54-203ENST00000409558 C17orf80Q9BSJ5 609 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 CIPCQ9C0C6 399 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 NSUN3Q9H649 340 aaKnown RBP13.29□□□□□ -0.28
VPS54-203ENST00000409558 ASB8Q9H765 288 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 PKP3Q9Y446 797 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 NME4O00746 187 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 GSNP06396 782 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 STK19P49842 368 aaPredicted RBP13.29□□□□□ -0.28
VPS54-203ENST00000409558 KCNK10P57789 538 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 RFLNAQ6ZTI6 216 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 ZNF366Q8N895 744 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 FAM47BQ8NA70 645 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 CCT7Q99832 543 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 Q9H521 79 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 HMX1Q9NP08 348 aaPredicted RBP13.29□□□□□ -0.28
VPS54-203ENST00000409558 CLEC4EQ9ULY5 219 aa13.29□□□□□ -0.28
VPS54-203ENST00000409558 MROH6A6NGR9 719 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 BCAS2O75934 225 aaPredicted RBP13.28□□□□□ -0.28
VPS54-203ENST00000409558 STC2O76061 302 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 CLDN7O95471 211 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 CAPN1P07384 714 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 FAM163BP0C2L3 166 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 SELPP16109 830 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 LPOP22079 712 aaPredicted RBP13.28□□□□□ -0.28
VPS54-203ENST00000409558 CA5AP35218 305 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 TIAL1Q01085 375 aaKnown RBP eCLIP13.28□□□□□ -0.28
VPS54-203ENST00000409558 DDX39BQ13838 428 aaKnown RBP13.28□□□□□ -0.28
VPS54-203ENST00000409558 NADK2Q4G0N4 442 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 PAGE3Q5JUK9 113 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 ZNF683Q8IZ20 524 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 APCDD1Q8J025 514 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 PTCD2Q8WV60 388 aaKnown RBP13.28□□□□□ -0.28
VPS54-203ENST00000409558 RNF145Q96MT1 663 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 DCUN1D5Q9BTE7 237 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 TDRD1Q9BXT4 1180 aaKnown RBP13.28□□□□□ -0.28
VPS54-203ENST00000409558 UNC93B1Q9H1C4 597 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 CHD7Q9P2D1 2997 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 SUN2Q9UH99 717 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 CNOT6Q9ULM6 557 aaKnown RBP13.28□□□□□ -0.28
VPS54-203ENST00000409558 DOCK6Q96HP0 2047 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 ANKRD66B4E2M5 251 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 LIN7AO14910 233 aaPredicted RBP13.28□□□□□ -0.28
VPS54-203ENST00000409558 LRATO95237 230 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 PKMP14618 531 aaKnown RBP13.28□□□□□ -0.28
VPS54-203ENST00000409558 SLC2A4P14672 509 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 LBPP18428 481 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 CSKP41240 450 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 INHBEP58166 350 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 PCYOX1LQ8NBM8 494 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 MAGEE2Q8TD90 523 aaPredicted RBP13.28□□□□□ -0.28
VPS54-203ENST00000409558 CASD1Q96PB1 797 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 NR1H4Q96RI1 486 aaPredicted RBP13.28□□□□□ -0.28
VPS54-203ENST00000409558 FARSBQ9NSD9 589 aaKnown RBP13.28□□□□□ -0.28
VPS54-203ENST00000409558 RIMS3Q9UJD0 308 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 MAGED1Q9Y5V3 778 aaPredicted RBP13.28□□□□□ -0.28
VPS54-203ENST00000409558 LOC285095A0A1B0GVY8 99 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 IL2P60568 153 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 CPSF6Q16630 551 aaKnown RBP eCLIP13.28□□□□□ -0.28
VPS54-203ENST00000409558 ANKRD46Q86W74 232 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 BEGAINQ9BUH8 593 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 BCAP29Q9UHQ4 241 aa13.28□□□□□ -0.28
VPS54-203ENST00000409558 POLR3HQ9Y535 204 aaPredicted RBP13.28□□□□□ -0.28
VPS54-203ENST00000409558 CHEK2O96017 543 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 LRP8Q14114 963 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 ARTNQ5T4W7 220 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 CCSAPQ6IQ19 270 aaPredicted RBP13.27□□□□□ -0.28
VPS54-203ENST00000409558 MFN1Q8IWA4 741 aa13.27□□□□□ -0.28
VPS54-203ENST00000409558 KLQ9UEF7 1012 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms