RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 FBXW11Q9UKB1 542 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 SLC27A5Q9Y2P5 690 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 SLC30A1Q9Y6M5 507 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 ZCWPW2A0A1B0GU75 182 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 FAM189A1O60320 539 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 BCAS2O75934 225 aaPredicted RBP11.88□□□□□ -0.51
HMGB1-206ENST00000405805 HLA-DQB2P05538 268 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 DIO3P55073 304 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 PIGFQ07326 219 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 MAPRE1Q15691 268 aaKnown RBP11.88□□□□□ -0.51
HMGB1-206ENST00000405805 UBE2UQ5VVX9 321 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 KHSRPQ92945 711 aaKnown RBP eCLIP11.88□□□□□ -0.512e-8■□□□□ 8.9
HMGB1-206ENST00000405805 GPR63Q9BZJ6 419 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 MUC3BQ9H195 1237 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 SLC38A7Q9NVC3 462 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 TBC1D13Q9NVG8 400 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 TMLHEQ9NVH6 421 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 SMPD4Q9NXE4 827 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 EBF1Q9UH73 591 aa11.88□□□□□ -0.51
HMGB1-206ENST00000405805 COL11A2P13942 1736 aaPredicted RBP11.88□□□□□ -0.51
HMGB1-206ENST00000405805 ZBTB42B2RXF5 422 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 BTN3A3O00478 584 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 NOBOXO60393 691 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 ODC1P11926 461 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 FOSL2P15408 326 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 AFF1P51825 1210 aaKnown RBP11.87□□□□□ -0.51
HMGB1-206ENST00000405805 MTPNP58546 118 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 C1QTNF8P60827 252 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 DUSP28Q4G0W2 176 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 SNAP47Q5SQN1 464 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 KIAA1841Q6NSI8 718 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 HMBOX1Q6NT76 420 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 GCNT7Q6ZNI0 430 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 SLCO6A1Q86UG4 719 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 FBXO32Q969P5 355 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 GPR22Q99680 433 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 TCAF1Q9Y4C2 921 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 CROCCQ5TZA2 2017 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 A0A087X1B8 175 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 ENPP3O14638 875 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 PRKCQQ04759 706 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 LIPEQ05469 1076 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 PUDPQ08623 228 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 ZNF846Q147U1 533 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 PAGE2Q7Z2X7 111 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 GALNT5Q7Z7M9 940 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 ZDHHC13Q8IUH4 622 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 CCDC117Q8IWD4 279 aaPredicted RBP11.87□□□□□ -0.51
HMGB1-206ENST00000405805 AHI1Q8N157 1196 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 OR13C4Q8NGS5 318 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 PSMG2Q969U7 264 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 BDH2Q9BUT1 245 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 RRAGCQ9HB90 399 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 PLAC1Q9HBJ0 212 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 ARFGEF1Q9Y6D6 1849 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 J3KR12 359 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 HSMCR30P0CW71 290 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 ZNF182P17025 639 aaPredicted RBP11.87□□□□□ -0.51
HMGB1-206ENST00000405805 CD68P34810 354 aaPredicted RBP11.87□□□□□ -0.51
HMGB1-206ENST00000405805 NR4A2P43354 598 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 PSEN2P49810 448 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 TBX4P57082 545 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 TSNQ15631 228 aaKnown RBP11.87□□□□□ -0.51
HMGB1-206ENST00000405805 OGFRL1Q5TC84 451 aaPredicted RBP11.87□□□□□ -0.51
HMGB1-206ENST00000405805 KLHL17Q6TDP4 642 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 ABRAXAS1Q6UWZ7 409 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 KCTD8Q6ZWB6 473 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 OR6K2Q8NGY2 324 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 BRI3BPQ8WY22 251 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 NPY6RQ99463 290 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 HNRNPABQ99729 332 aaKnown RBP11.87□□□□□ -0.51
HMGB1-206ENST00000405805 PAAF1Q9BRP4 392 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 MIR1-1HGQ9H1L0 117 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 AGO3Q9H9G7 860 aaKnown RBP11.87□□□□□ -0.51
HMGB1-206ENST00000405805 FANCEQ9HB96 536 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 BRD7Q9NPI1 651 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 CCDC177Q9NQR7 707 aaPredicted RBP11.87□□□□□ -0.51
HMGB1-206ENST00000405805 VPS45Q9NRW7 570 aa11.87□□□□□ -0.51
HMGB1-206ENST00000405805 KRT87PA6NCN2 255 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 CNMDO75829 334 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 CRYZL1O95825 349 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 S100A9P06702 114 aaKnown RBP11.86□□□□□ -0.51
HMGB1-206ENST00000405805 ARHGDIAP52565 204 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 SLC10A7Q0GE19 358 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 DMC1Q14565 340 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 STK11Q15831 433 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 PIGGQ5H8A4 983 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 TIGD7Q6NT04 549 aaPredicted RBP11.86□□□□□ -0.51
HMGB1-206ENST00000405805 C12orf43Q96C57 262 aaKnown RBP11.86□□□□□ -0.51
HMGB1-206ENST00000405805 ASB9Q96DX5 294 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 RIBC2Q9H4K1 309 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 EPS8L2Q9H6S3 715 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 ST3GAL5Q9UNP4 418 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 ARL5AQ9Y689 179 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 PLOD2O00469 737 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 HTRA2O43464 458 aaPredicted RBP11.86□□□□□ -0.51
HMGB1-206ENST00000405805 NOS1APO75052 506 aaPredicted RBP11.86□□□□□ -0.51
HMGB1-206ENST00000405805 NDST2P52849 883 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 RHDQ02161 417 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 SULT2A1Q06520 285 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms