RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 ACSM2AQ08AH3 577 aa18.42■□□□□ 0.54
USP48-204ENST00000400301 TTC23Q5W5X9 447 aa18.42■□□□□ 0.54
USP48-204ENST00000400301 ACSM2BQ68CK6 577 aa18.42■□□□□ 0.54
USP48-204ENST00000400301 PAQR9Q6ZVX9 377 aa18.42■□□□□ 0.54
USP48-204ENST00000400301 SYT12Q8IV01 421 aa18.42■□□□□ 0.54
USP48-204ENST00000400301 GRIN3AQ8TCU5 1115 aa18.42■□□□□ 0.54
USP48-204ENST00000400301 C8orf48Q96LL4 319 aa18.42■□□□□ 0.54
USP48-204ENST00000400301 MRM3Q9HC36 420 aaKnown RBP18.42■□□□□ 0.54
USP48-204ENST00000400301 MRPL17Q9NRX2 175 aaKnown RBP18.42■□□□□ 0.54
USP48-204ENST00000400301 GKN1Q9NS71 199 aa18.42■□□□□ 0.54
USP48-204ENST00000400301 GIMAP2Q9UG22 337 aa18.42■□□□□ 0.54
USP48-204ENST00000400301 BCAS2O75934 225 aaPredicted RBP18.41■□□□□ 0.54
USP48-204ENST00000400301 RECQL5O94762 991 aaPredicted RBP18.41■□□□□ 0.54
USP48-204ENST00000400301 SLC7A1P30825 629 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 SULT2A1Q06520 285 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 STARD3Q14849 445 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 ADHFE1Q8IWW8 467 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 OR2T12Q8NG77 320 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 PGAP3Q96FM1 320 aaPredicted RBP18.41■□□□□ 0.54
USP48-204ENST00000400301 ZNF558Q96NG5 402 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 COPS8Q99627 209 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 ZNF229Q9UJW7 825 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 ZNF623O75123 536 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 ACLYP53396 1101 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 TAF1AQ15573 450 aaPredicted RBP18.41■□□□□ 0.54
USP48-204ENST00000400301 PNPLA1Q8N8W4 532 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 C3orf58Q8NDZ4 430 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 OR52E6Q96RD3 313 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 IMPAD1Q9NX62 359 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 PCDHB1Q9Y5F3 818 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 CHRNA1P02708 482 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 ABCB1P08183 1280 aaPredicted RBP18.41■□□□□ 0.54
USP48-204ENST00000400301 CKBP12277 381 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 IFNA8P32881 189 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 PLCL1Q15111 1095 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 CERS6Q6ZMG9 384 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 CYP4V2Q6ZWL3 525 aaPredicted RBP18.41■□□□□ 0.54
USP48-204ENST00000400301 LRRTM3Q86VH5 581 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 SLC44A2Q8IWA5 706 aaPredicted RBP18.41■□□□□ 0.54
USP48-204ENST00000400301 SYTL1Q8IYJ3 562 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 NRG4Q8WWG1 115 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 LZICQ8WZA0 190 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 IMP4Q96G21 291 aaKnown RBP18.41■□□□□ 0.54
USP48-204ENST00000400301 DGCR6LQ9BY27 220 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 RIBC2Q9H4K1 309 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 TMEM161AQ9NX61 479 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 MAGEL2Q9UJ55 1249 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 PHIPQ8WWQ0 1821 aa18.41■□□□□ 0.54
USP48-204ENST00000400301 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.4■□□□□ 0.54
USP48-204ENST00000400301 SLC28A1O00337 649 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 PRAMEF1O95521 474 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 MAGEA3P43357 314 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 IKBKEQ14164 716 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 ZNF549Q6P9A3 640 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 POLR3BQ9NW08 1133 aaPredicted RBP18.4■□□□□ 0.54
USP48-204ENST00000400301 TMEM248Q9NWD8 314 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 CACNA2D2Q9NY47 1150 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 FCF1Q9Y324 198 aaKnown RBP18.4■□□□□ 0.54
USP48-204ENST00000400301 SORBS2O94875 1100 aaKnown RBP18.4■□□□□ 0.54
USP48-204ENST00000400301 DNAJB13P59910 316 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 PFKPQ01813 784 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 TECRLQ5HYJ1 363 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 ADGRG6Q86SQ4 1221 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 SFRP1Q8N474 314 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 SPPL2AQ8TCT8 520 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 GLMNQ92990 594 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 SNX6Q9UNH7 406 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 LZTS3O60299 673 aaPredicted RBP18.4■□□□□ 0.54
USP48-204ENST00000400301 ECI2O75521 394 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 PAPSS2O95340 614 aaPredicted RBP18.4■□□□□ 0.54
USP48-204ENST00000400301 CST1P01037 141 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 TTKP33981 857 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 TRAP1Q12931 704 aaKnown RBP18.4■□□□□ 0.54
USP48-204ENST00000400301 CEACAM7Q14002 265 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 FBXO22Q8NEZ5 403 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 CENPNQ96H22 339 aaPredicted RBP18.4■□□□□ 0.54
USP48-204ENST00000400301 GORASP1Q9BQQ3 440 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 PRRC2BQ5JSZ5 2229 aaKnown RBP18.4■□□□□ 0.54
USP48-204ENST00000400301 ZSCAN9O15535 394 aaPredicted RBP18.4■□□□□ 0.54
USP48-204ENST00000400301 ESR1P03372 595 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 GSSP48637 474 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 ADARP55265 1226 aaKnown RBP18.4■□□□□ 0.54
USP48-204ENST00000400301 CACNG1Q06432 222 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 GPR107Q5VW38 600 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 PROSER1Q86XN7 944 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 AADATQ8N5Z0 425 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 LINC01465Q8N7H1 131 aa18.4■□□□□ 0.54
USP48-204ENST00000400301 AARSD1Q9BTE6 412 aaKnown RBP18.4■□□□□ 0.54
USP48-204ENST00000400301 CDC7O00311 574 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 SPATA31D3P0C874 917 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 POLR2LP62875 67 aaKnown RBP18.39■□□□□ 0.53
USP48-204ENST00000400301 SPATA31D4Q6ZUB0 917 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 UMODL1-AS1Q8N2C9 162 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 TPD52L3Q96J77 140 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 TSSK3Q96PN8 268 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 GALPQ9UBC7 116 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 SUCOQ9UBS9 1254 aaKnown RBP18.39■□□□□ 0.53
USP48-204ENST00000400301 CA12O43570 354 aa18.39■□□□□ 0.53
USP48-204ENST00000400301 RNASEH1O60930 286 aaKnown RBP18.39■□□□□ 0.53
USP48-204ENST00000400301 LRATO95237 230 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms