RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 DHX35Q9H5Z1 703 aaKnown RBP11.09□□□□□ -0.63
CUX1-204ENST00000393824 RMND5AQ9H871 391 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 LRRC40Q9H9A6 602 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 SIAEQ9HAT2 523 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 AKIP1Q9NQ31 210 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 DTLQ9NZJ0 730 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 IFT80Q9P2H3 777 aaPredicted RBP11.09□□□□□ -0.63
CUX1-204ENST00000393824 FBXO9Q9UK97 447 aaPredicted RBP11.09□□□□□ -0.63
CUX1-204ENST00000393824 INSL6Q9Y581 213 aa11.09□□□□□ -0.63
CUX1-204ENST00000393824 LINC01553A4QN01 128 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 MSI1O43347 362 aaKnown RBP11.08□□□□□ -0.64
CUX1-204ENST00000393824 KCNH1O95259 989 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 ATP6V1B2P21281 511 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 IL10P22301 178 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 OR1D2P34982 312 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 RCVRNP35243 200 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 SQLEQ14534 574 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 DLG2Q15700 870 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 FAM209AQ5JX71 171 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 XAF1Q6GPH4 301 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 BHLHA9Q7RTU4 235 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 TFAP2DQ7Z6R9 452 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 THEM5Q8N1Q8 247 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 SFRP1Q8N474 314 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 FBXO22Q8NEZ5 403 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 FAM110BQ8TC76 370 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 SP7Q8TDD2 431 aaPredicted RBP11.08□□□□□ -0.64
CUX1-204ENST00000393824 S100ZQ8WXG8 99 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 TMEM169Q96HH4 297 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 RAD9AQ99638 391 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 CSNK1G1Q9HCP0 422 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 SYBUQ9NX95 663 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 SMPD3Q9NY59 655 aaPredicted RBP11.08□□□□□ -0.64
CUX1-204ENST00000393824 VWA7Q9Y334 891 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 ST14Q9Y5Y6 855 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 COL6A3P12111 3177 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 TRIOBPQ9H2D6 2365 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 DHRS12A0PJE2 317 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 TARM1B6A8C7 271 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 TK2O00142 265 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 RGS13O14921 159 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 SOD2P04179 222 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 CA3P07451 260 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 CPB1P15086 417 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 ATXN1P54253 815 aaKnown RBP11.08□□□□□ -0.64
CUX1-204ENST00000393824 ADARB1P78563 741 aaKnown RBP11.08□□□□□ -0.64
CUX1-204ENST00000393824 TSPY1Q01534 308 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 IFITM3Q01628 133 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 IFRD2Q12894 506 aaPredicted RBP11.08□□□□□ -0.64
CUX1-204ENST00000393824 NCBP2-AS2Q69YL0 99 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 PARP8Q8N3A8 854 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 STYXQ8WUJ0 223 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 FKBP10Q96AY3 582 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 SMARCD1Q96GM5 515 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 MAGED4Q96JG8 741 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 FCRL3Q96P31 734 aaPredicted RBP11.08□□□□□ -0.64
CUX1-204ENST00000393824 MCMBPQ9BTE3 642 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 SLC25A23Q9BV35 468 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 C1QTNF1Q9BXJ1 281 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 CERS4Q9HA82 394 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 FANCEQ9HB96 536 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 SPG21Q9NZD8 308 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 AP4E1Q9UPM8 1137 aa11.08□□□□□ -0.64
CUX1-204ENST00000393824 YBX2Q9Y2T7 364 aaKnown RBP11.08□□□□□ -0.64
CUX1-204ENST00000393824 PTPRDP23468 1912 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 MAGEB16A2A368 324 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 MTMR11A4FU01 709 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 ANKRD34BA5PLL1 514 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 YJEFN3A6XGL0 299 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 H0YAE9 185 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 TNFRSF10AO00220 468 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 PHGDHO43175 533 aaKnown RBP11.07□□□□□ -0.64
CUX1-204ENST00000393824 NRP2O60462 931 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 FYNP06241 537 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 SNRPB2P08579 225 aaKnown RBP11.07□□□□□ -0.64
CUX1-204ENST00000393824 USP17L7P0C7H9 530 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 LAG3P18627 525 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 TCEA1P23193 301 aaKnown RBP11.07□□□□□ -0.64
CUX1-204ENST00000393824 ARCN1P48444 511 aaKnown RBP11.07□□□□□ -0.64
CUX1-204ENST00000393824 TKTL1P51854 596 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 ERVFC1P60507 584 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 DUSP4Q13115 394 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 CAMK1Q14012 370 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 FASTKQ14296 549 aaKnown RBP11.07□□□□□ -0.64
CUX1-204ENST00000393824 INPP5AQ14642 412 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 PSMD5Q16401 504 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 INAVAQ3KP66 663 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 TIGD2Q4W5G0 525 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 PERM1Q5SV97 790 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 BROXQ5VW32 411 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 CHST15Q7LFX5 561 aaPredicted RBP11.07□□□□□ -0.64
CUX1-204ENST00000393824 TMEM135Q86UB9 458 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 OFCC1Q8IZS5 231 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 BPIFB6Q8NFQ5 453 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 SPPL2BQ8TCT7 592 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 ERLEC1Q96DZ1 483 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 BTN2A3PQ96KV6 586 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 CENPOQ9BU64 300 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 ULBP1Q9BZM6 244 aa11.07□□□□□ -0.64
CUX1-204ENST00000393824 TRIM15Q9C019 465 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms