RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ZNF572Q7Z3I7 529 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 TEX47Q8TBZ9 253 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 NARS2Q96I59 477 aaKnown RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 GPR21Q99679 349 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 TIMMDC1Q9NPL8 285 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 ZNF490Q9ULM2 529 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 UBE2QL1A1L167 161 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 PGRMC2O15173 223 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 IDH3BO43837 385 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 ADH1AP07327 375 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 UNGP13051 313 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 BUD31P41223 144 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 DUSP4Q13115 394 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 HNRNPDQ14103 355 aaKnown RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 PYDC2Q56P42 97 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 CXXC5Q7LFL8 322 aaKnown RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 SLCO6A1Q86UG4 719 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 RALGPS2Q86X27 583 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 CBR4Q8N4T8 237 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 ATAD1Q8NBU5 361 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 CLHC1Q8NHS4 586 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 SKA1Q96BD8 255 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 CENPNQ96H22 339 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 HNRNPABQ99729 332 aaKnown RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 RBM4BQ9BQ04 359 aaKnown RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 ACAT2Q9BWD1 397 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 RBM4Q9BWF3 364 aaKnown RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 RACGAP1Q9H0H5 632 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 SIX2Q9NPC8 291 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 DNAJC11Q9NVH1 559 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 NFKBIL1Q9UBC1 381 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 OR10H1Q9Y4A9 318 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 A0A1W2PQH9 124 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 DPPA5A6NC42 116 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 DNAJA2O60884 412 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 KLHL18O94889 574 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 C1RP00736 705 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 CHRNGP07510 517 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 THRBP10828 461 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 PCSK2P16519 638 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 RPL4P36578 427 aaKnown RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 ASMTP46597 345 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 RPS9P46781 194 aaKnown RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 MANFP55145 182 aaKnown RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 MPP1Q00013 466 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 CCNIQ14094 377 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 LPIN1Q14693 890 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 TREML2Q5T2D2 321 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 CAPN13Q6MZZ7 669 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 CRTC3Q6UUV7 619 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 CHSY3Q70JA7 882 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 LRRC17Q8N6Y2 441 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 PCDH19Q8TAB3 1148 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 NDRG1Q92597 394 aaKnown RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 COX4I2Q96KJ9 171 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 AARSD1Q9BTE6 412 aaKnown RBP11.37□□□□□ -0.59
PTPRF-203ENST00000372407 PDZD7Q9H5P4 517 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 POLE3Q9NRF9 147 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 NID2Q14112 1375 aa11.37□□□□□ -0.59
PTPRF-203ENST00000372407 COL22A1Q8NFW1 1626 aaPredicted RBP11.36□□□□□ -0.59
PTPRF-203ENST00000372407 NPEPPSL1A6NEC2 478 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 CCDC85CA6NKD9 419 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 ISM1B1AKI9 464 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 ECDO95905 644 aaPredicted RBP11.36□□□□□ -0.59
PTPRF-203ENST00000372407 CAPN1P07384 714 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 CCNYL3P0C7X3 344 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 MYL9P24844 172 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 ICAM3P32942 547 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 MTHFRP42898 656 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 FLT3LGP49771 235 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 CREMQ03060 361 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 CLCQ05315 142 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 CCDC157Q569K6 752 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 LIN54Q6MZP7 749 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 ESRP1Q6NXG1 681 aaKnown RBP11.36□□□□□ -0.59
PTPRF-203ENST00000372407 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.36□□□□□ -0.59
PTPRF-203ENST00000372407 RNF44Q7L0R7 432 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 SLC34A3Q8N130 599 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 FSTL5Q8N475 847 aaPredicted RBP11.36□□□□□ -0.59
PTPRF-203ENST00000372407 ZNF781Q8N8C0 355 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 ARL10Q8N8L6 244 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 SPATA22Q8NHS9 363 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 GPR152Q8TDT2 470 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 CSGALNACT1Q8TDX6 532 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 TTPALQ9BTX7 342 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 IPPKQ9H8X2 491 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 APOBEC3GQ9HC16 384 aaKnown RBP11.36□□□□□ -0.59
PTPRF-203ENST00000372407 XPNPEP1Q9NQW7 623 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 KIAA1522Q9P206 1035 aaPredicted RBP11.36□□□□□ -0.59
PTPRF-203ENST00000372407 CNTN6Q9UQ52 1028 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 STXBP5LQ9Y2K9 1186 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 MAFBQ9Y5Q3 323 aaPredicted RBP11.36□□□□□ -0.59
PTPRF-203ENST00000372407 CHURC1-FNTBB4DL54 471 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 MATN3O15232 486 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 PMM2O15305 246 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 OR10H2O60403 315 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 IFNA16P05015 189 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 AQP1P29972 269 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 PBX3P40426 434 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 TAS2R39P59534 338 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms