RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 SLC12A4Q9UP95 1085 aa18.27■□□□□ 0.52
USP39-201ENST00000323701 PLXNB3Q9ULL4 1909 aa18.27■□□□□ 0.52
USP39-201ENST00000323701 TSPAN11A1L157 253 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 TBC1D3BA6NDS4 549 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 AGAP14A8MT82 685 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 ARNTLO00327 626 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 PRMT5O14744 637 aaPredicted RBP18.27■□□□□ 0.51
USP39-201ENST00000323701 HSPA4LO95757 839 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 ITGB6P18564 788 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 CHRM3P20309 590 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 ITGALP20701 1170 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 MPSTP25325 297 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 SPINT3P49223 89 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 CLCN7P51798 805 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 ADGRE1Q14246 886 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 GRIN2CQ14957 1233 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 HNRNPA1L2Q32P51 320 aaKnown RBP18.27■□□□□ 0.51
USP39-201ENST00000323701 FBXW10Q5XX13 1052 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 KLC3Q6P597 504 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 CHRDL2Q6WN34 429 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 TRIM67Q6ZTA4 783 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 CCNYL1Q8N7R7 359 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 EEF1AKMT1Q8WVE0 214 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 EXT2Q93063 718 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 PLCD4Q9BRC7 762 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 DRC3Q9H069 523 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 TMEM245Q9H330 911 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 KCNK4Q9NYG8 393 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 SLC8A2Q9UPR5 921 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 PIKFYVEQ9Y2I7 2098 aa18.27■□□□□ 0.51
USP39-201ENST00000323701 F5P12259 2224 aa18.26■□□□□ 0.51
USP39-201ENST00000323701 UPK3BL1B0FP48 263 aa18.26■□□□□ 0.51
USP39-201ENST00000323701 UPK3BL2E5RIL1 263 aa18.26■□□□□ 0.51
USP39-201ENST00000323701 CDC7O00311 574 aa18.26■□□□□ 0.51
USP39-201ENST00000323701 SPINT1O43278 529 aa18.26■□□□□ 0.51
USP39-201ENST00000323701 ESR1P03372 595 aa18.26■□□□□ 0.51
USP39-201ENST00000323701 MTHFD2P13995 350 aa18.26■□□□□ 0.51
USP39-201ENST00000323701 ATP5F1P24539 256 aaPredicted RBP18.26■□□□□ 0.51
USP39-201ENST00000323701 POLR2LP62875 67 aaKnown RBP18.26■□□□□ 0.51
USP39-201ENST00000323701 RALGDSQ12967 914 aa18.26■□□□□ 0.51
USP39-201ENST00000323701 Q6ZVL8 140 aa18.26■□□□□ 0.51
USP39-201ENST00000323701 NXPE1Q8N323 547 aa18.26■□□□□ 0.51
USP39-201ENST00000323701 CPA6Q8N4T0 437 aa18.26■□□□□ 0.51
USP39-201ENST00000323701 SKA1Q96BD8 255 aa18.26■□□□□ 0.51
USP39-201ENST00000323701 TTYH1Q9H313 450 aaPredicted RBP18.26■□□□□ 0.51
USP39-201ENST00000323701 MID2Q9UJV3 735 aa18.26■□□□□ 0.51
USP39-201ENST00000323701 VPS9D1Q9Y2B5 631 aa18.26■□□□□ 0.51
USP39-201ENST00000323701 CAPN7Q9Y6W3 813 aa18.26■□□□□ 0.51
USP39-201ENST00000323701 ANKRD12Q6UB98 2062 aa18.26■□□□□ 0.51
USP39-201ENST00000323701 ATG2BQ96BY7 2078 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 TMEM114B3SHH9 223 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 KPNA3O00505 521 aaPredicted RBP18.25■□□□□ 0.51
USP39-201ENST00000323701 RBP1P09455 135 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 ETV3P41162 512 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 IL12RB1P42701 662 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 B4GALNT1Q00973 533 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 BNIP1Q12981 228 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 CERS6Q6ZMG9 384 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 YAF2Q8IY57 180 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 CPNE9Q8IYJ1 553 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 MAPK15Q8TD08 544 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 KCNJ9Q92806 393 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 ELSPBP1Q96BH3 223 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 MSLNLQ96KJ4 702 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 ATOH8Q96SQ7 321 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 FAM129BQ96TA1 746 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 C19orf43Q9BQ61 176 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 TNFRSF12AQ9NP84 129 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 ZDHHC2Q9UIJ5 367 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 CRLS1Q9UJA2 301 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 TSR3Q9UJK0 312 aaKnown RBP18.25■□□□□ 0.51
USP39-201ENST00000323701 TRIM33Q9UPN9 1127 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 MTCH2Q9Y6C9 303 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 LRRC14BA6NHZ5 514 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 UBXN8O00124 270 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 VPS26AO75436 327 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 IPO13O94829 963 aaKnown RBP18.25■□□□□ 0.51
USP39-201ENST00000323701 FSBPO95073 299 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 HNRNPLP14866 589 aaKnown RBP eCLIP18.25■□□□□ 0.51
USP39-201ENST00000323701 VIPR1P32241 457 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 KPNA2P52292 529 aaKnown RBP18.25■□□□□ 0.51
USP39-201ENST00000323701 PRKAA2P54646 552 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 CCDC15Q0P6D6 951 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 TUBB3Q13509 450 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 RCN2Q14257 317 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 TSNQ15631 228 aaKnown RBP18.25■□□□□ 0.51
USP39-201ENST00000323701 FBXO48Q5FWF7 155 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 ICE2Q659A1 982 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 CCDC91Q7Z6B0 441 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 CLNKQ7Z7G1 428 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 PPP4R1Q8TF05 950 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 PRO3102Q9H379 93 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 CACNA2D2Q9NY47 1150 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 NCKIPSDQ9NZQ3 722 aa18.25■□□□□ 0.51
USP39-201ENST00000323701 KAT7O95251 611 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 T-ENOLP0DO92 83 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 GM2AP17900 193 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 EGFLAMQ63HQ2 1017 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 SERPINA13PQ6UXR4 307 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 ARRDC3Q96B67 414 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms