RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 NOBOXO60393 691 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 TMEM63AO94886 807 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 DKK1O94907 266 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 ANXA6P08133 673 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 COILP38432 576 aaPredicted RBP11.92□□□□□ -0.5
SCFD1-201ENST00000311943 ZNF140P52738 457 aaPredicted RBP11.92□□□□□ -0.5
SCFD1-201ENST00000311943 SESN2P58004 480 aaPredicted RBP11.92□□□□□ -0.5
SCFD1-201ENST00000311943 B4GALNT1Q00973 533 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 SEPT7Q16181 437 aaKnown RBP11.92□□□□□ -0.5
SCFD1-201ENST00000311943 C6orf132Q5T0Z8 1188 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 CCDC137Q6PK04 289 aaKnown RBP11.92□□□□□ -0.5
SCFD1-201ENST00000311943 LDB1Q86U70 411 aaPredicted RBP11.92□□□□□ -0.5
SCFD1-201ENST00000311943 KLHL7Q8IXQ5 586 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 PIANPQ8IYJ0 282 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 NAGSQ8N159 534 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 TRAM1L1Q8N609 369 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 LILRA3Q8N6C8 439 aaPredicted RBP11.92□□□□□ -0.5
SCFD1-201ENST00000311943 RASGEF1AQ8N9B8 481 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 GDAP1Q8TB36 358 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 FAM174AQ8TBP5 190 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 BTN2A2Q8WVV5 523 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 PBKQ96KB5 322 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 TBATAQ96M53 351 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 NRTNQ99748 197 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 ARNT2Q9HBZ2 717 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 SCHIP1Q9P0W5 487 aaPredicted RBP11.92□□□□□ -0.5
SCFD1-201ENST00000311943 TBC1D29Q9UFV1 150 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 GPR34Q9UPC5 381 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 DOLKQ9UPQ8 538 aa11.92□□□□□ -0.5
SCFD1-201ENST00000311943 DRG1Q9Y295 367 aaKnown RBP11.92□□□□□ -0.5
SCFD1-201ENST00000311943 COL5A1P20908 1838 aaPredicted RBP11.92□□□□□ -0.5
SCFD1-201ENST00000311943 PGRMC1O00264 195 aaKnown RBP11.91□□□□□ -0.5
SCFD1-201ENST00000311943 PRAMEF1O95521 474 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 ECEL1O95672 775 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 LPOP22079 712 aaPredicted RBP11.91□□□□□ -0.5
SCFD1-201ENST00000311943 NFKBIAP25963 317 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 SPAM1P38567 509 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 ACTR1BP42025 376 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 ACTR1AP61163 376 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 INSM1Q01101 510 aaPredicted RBP11.91□□□□□ -0.5
SCFD1-201ENST00000311943 GPS1Q13098 491 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 SEMA5AQ13591 1074 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 TAF1AQ15573 450 aaPredicted RBP11.91□□□□□ -0.5
SCFD1-201ENST00000311943 GPRC6AQ5T6X5 926 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 DRICH1Q6PGQ1 229 aaPredicted RBP11.91□□□□□ -0.5
SCFD1-201ENST00000311943 NAPRTQ6XQN6 538 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 SYT10Q6XYQ8 523 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 EFL1Q7Z2Z2 1120 aaKnown RBP11.91□□□□□ -0.5
SCFD1-201ENST00000311943 TMPRSS9Q7Z410 1059 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 RAB44Q7Z6P3 723 aaPredicted RBP11.91□□□□□ -0.5
SCFD1-201ENST00000311943 Q8N9G6 341 aaPredicted RBP11.91□□□□□ -0.5
SCFD1-201ENST00000311943 DNAAF3Q8N9W5 541 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 IFI44Q8TCB0 444 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 BRSK1Q8TDC3 778 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 GPBAR1Q8TDU6 330 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 SGF29Q96ES7 293 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 PRDM8Q9NQV8 689 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 CHRAC1Q9NRG0 131 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 TAAR2Q9P1P5 351 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 COL27A1Q8IZC6 1860 aaPredicted RBP11.91□□□□□ -0.5
SCFD1-201ENST00000311943 NEMP2A6NFY4 417 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 E7EVH7 732 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 SNX2O60749 519 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 BANF1O75531 89 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 KRT14P02533 472 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 HOXC4P09017 264 aaPredicted RBP11.91□□□□□ -0.5
SCFD1-201ENST00000311943 CKMT1AP12532 417 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 RPL10P27635 214 aaKnown RBP11.91□□□□□ -0.5
SCFD1-201ENST00000311943 LMAN1P49257 510 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 DRG2P55039 364 aaKnown RBP11.91□□□□□ -0.5
SCFD1-201ENST00000311943 SEMA3AQ14563 771 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 PAPD7Q5XG87 772 aaKnown RBP11.91□□□□□ -0.5
SCFD1-201ENST00000311943 XKR5Q6UX68 686 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 C11orf96Q7Z7L8 435 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 ACTRT1Q8TDG2 376 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 ADAMTS14Q8WXS8 1223 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 SCARF2Q96GP6 870 aaPredicted RBP11.91□□□□□ -0.5
SCFD1-201ENST00000311943 OR2M4Q96R27 311 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 CDC6Q99741 560 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 FERMT1Q9BQL6 677 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 ASB8Q9H765 288 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 LRRC40Q9H9A6 602 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 PCDHB1Q9Y5F3 818 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 RNF215Q9Y6U7 377 aa11.91□□□□□ -0.5
SCFD1-201ENST00000311943 GOLGA8KD6RF30 607 aa11.9□□□□□ -0.5
SCFD1-201ENST00000311943 GOLGA8TH3BQL2 631 aa11.9□□□□□ -0.5
SCFD1-201ENST00000311943 TNFRSF10CO14798 259 aa11.9□□□□□ -0.5
SCFD1-201ENST00000311943 YKT6O15498 198 aa11.9□□□□□ -0.5
SCFD1-201ENST00000311943 GRID2O43424 1007 aa11.9□□□□□ -0.5
SCFD1-201ENST00000311943 SGTAO43765 313 aa11.9□□□□□ -0.5
SCFD1-201ENST00000311943 NUAK1O60285 661 aa11.9□□□□□ -0.5
SCFD1-201ENST00000311943 RFPL3O75679 317 aa11.9□□□□□ -0.5
SCFD1-201ENST00000311943 SRP72O76094 671 aaKnown RBP11.9□□□□□ -0.5
SCFD1-201ENST00000311943 CDK14O94921 469 aa11.9□□□□□ -0.5
SCFD1-201ENST00000311943 PBLDP30039 288 aaPredicted RBP11.9□□□□□ -0.5
SCFD1-201ENST00000311943 MC4RP32245 332 aa11.9□□□□□ -0.5
SCFD1-201ENST00000311943 TNNT3P45378 269 aaPredicted RBP11.9□□□□□ -0.5
SCFD1-201ENST00000311943 DCDC1P59894 354 aa11.9□□□□□ -0.5
SCFD1-201ENST00000311943 TMEM115Q12893 351 aaPredicted RBP11.9□□□□□ -0.5
SCFD1-201ENST00000311943 ELOCQ15369 112 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms