RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 FBXO30Q8TB52 745 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 S100ZQ8WXG8 99 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 VMP1Q96GC9 406 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 HSFY1Q96LI6 401 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 GMLQ99445 158 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 C11orf84Q9BUA3 381 aaPredicted RBP13.41□□□□□ -0.26
SKA3-201ENST00000298260 TUBB1Q9H4B7 451 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 SYCE1LA8MT33 242 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 SLC1A7O00341 560 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 EEF2KO00418 725 aaKnown RBP13.41□□□□□ -0.26
SKA3-201ENST00000298260 MAFGO15525 162 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 SOAT2O75908 522 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 FADS2O95864 444 aaKnown RBP13.41□□□□□ -0.26
SKA3-201ENST00000298260 NDUFV1P49821 464 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 NKG7Q16617 165 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 LAIR1Q6GTX8 287 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 TAF2Q6P1X5 1199 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 SPESP1Q6UW49 350 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 HACD2Q6Y1H2 254 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 TBC1D21Q8IYX1 336 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 MIER2Q8N344 545 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 MINDY1Q8N5J2 469 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 PPM1MQ96MI6 270 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 HOPXQ9BPY8 73 aaPredicted RBP13.41□□□□□ -0.26
SKA3-201ENST00000298260 BDH2Q9BUT1 245 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 YTHDF1Q9BYJ9 559 aaKnown RBP13.41□□□□□ -0.26
SKA3-201ENST00000298260 ANK1P16157 1881 aa13.41□□□□□ -0.26
SKA3-201ENST00000298260 H0YAE9 185 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 DYRK3O43781 588 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 MITFO75030 526 aaPredicted RBP13.4□□□□□ -0.26
SKA3-201ENST00000298260 NPM3O75607 178 aaKnown RBP13.4□□□□□ -0.26
SKA3-201ENST00000298260 TOMM70O94826 608 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 GOT2P00505 430 aaKnown RBP13.4□□□□□ -0.26
SKA3-201ENST00000298260 CYP2C18P33260 490 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 UFM1P61960 85 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 BNIP2Q12982 314 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 DGUOKQ16854 277 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 GPR158Q5T848 1215 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 ENPP6Q6UWR7 440 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 ARHGAP36Q6ZRI8 547 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 LRRC49Q8IUZ0 686 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 OR6B3Q8NGW1 331 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 DYNC2LI1Q8TCX1 351 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 TTYH2Q9BSA4 534 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 ZBTB20Q9HC78 741 aaPredicted RBP13.4□□□□□ -0.26
SKA3-201ENST00000298260 MID1IP1Q9NPA3 183 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.4□□□□□ -0.26
SKA3-201ENST00000298260 DKK3Q9UBP4 350 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 SYNPO2Q9UMS6 1093 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 TESMINQ9Y4I5 508 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 CSADQ9Y600 493 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 CEP350Q5VT06 3117 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 CHRNA1P02708 482 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 SLC4A1P02730 911 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 DNTTP04053 509 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 CPB1P15086 417 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 STAT5BP51692 787 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 CLCNKBP51801 687 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 CBX2Q14781 532 aaPredicted RBP13.4□□□□□ -0.26
SKA3-201ENST00000298260 SYT16Q17RD7 645 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 SLC10A6Q3KNW5 377 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 PKDCCQ504Y2 493 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 SOWAHCQ53LP3 525 aaPredicted RBP13.4□□□□□ -0.26
SKA3-201ENST00000298260 NXNL2Q5VZ03 156 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 GLYATQ6IB77 296 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 CCBE1Q6UXH8 406 aaPredicted RBP13.4□□□□□ -0.26
SKA3-201ENST00000298260 ZBTB8OSQ8IWT0 167 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 RHOXF1Q8NHV9 184 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 MCOLN3Q8TDD5 553 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 CENPIQ92674 756 aaPredicted RBP13.4□□□□□ -0.26
SKA3-201ENST00000298260 ZFYVE19Q96K21 471 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 BTN2A3PQ96KV6 586 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 SLIRPQ9GZT3 109 aaKnown RBP13.4□□□□□ -0.26
SKA3-201ENST00000298260 RNF167Q9H6Y7 350 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 ZNF639Q9UID6 485 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 CARD8Q9Y2G2 431 aa13.4□□□□□ -0.26
SKA3-201ENST00000298260 M0QYT0 321 aa13.4□□□□□ -0.27
SKA3-201ENST00000298260 HS6ST1O60243 411 aa13.4□□□□□ -0.27
SKA3-201ENST00000298260 GABARAPO95166 117 aa13.4□□□□□ -0.27
SKA3-201ENST00000298260 C1RP00736 705 aa13.4□□□□□ -0.27
SKA3-201ENST00000298260 FTH1P02794 183 aa13.4□□□□□ -0.27
SKA3-201ENST00000298260 ASNSP08243 561 aa13.4□□□□□ -0.27
SKA3-201ENST00000298260 FCGR1AP12314 374 aa13.4□□□□□ -0.27
SKA3-201ENST00000298260 ALOX12P18054 663 aa13.4□□□□□ -0.27
SKA3-201ENST00000298260 LMO2P25791 158 aa13.4□□□□□ -0.27
SKA3-201ENST00000298260 CD6P30203 668 aa13.4□□□□□ -0.27
SKA3-201ENST00000298260 NOS2P35228 1153 aa13.4□□□□□ -0.27
SKA3-201ENST00000298260 MRPS15P82914 257 aaKnown RBP13.4□□□□□ -0.27
SKA3-201ENST00000298260 TARBP2Q15633 366 aaKnown RBP13.4□□□□□ -0.27
SKA3-201ENST00000298260 CEP78Q5JTW2 689 aa13.4□□□□□ -0.27
SKA3-201ENST00000298260 OTUD1Q5VV17 481 aaPredicted RBP13.4□□□□□ -0.27
SKA3-201ENST00000298260 TMEM207Q6UWW9 146 aa13.4□□□□□ -0.27
SKA3-201ENST00000298260 HFE2Q6ZVN8 426 aa13.4□□□□□ -0.27
SKA3-201ENST00000298260 TMEM179BQ7Z7N9 219 aa13.4□□□□□ -0.27
SKA3-201ENST00000298260 DTWD1Q8N5C7 304 aa13.4□□□□□ -0.27
SKA3-201ENST00000298260 TP53I13Q8NBR0 393 aaPredicted RBP13.4□□□□□ -0.27
SKA3-201ENST00000298260 TWIST2Q8WVJ9 160 aa13.4□□□□□ -0.27
SKA3-201ENST00000298260 FAM151AQ8WW52 585 aa13.4□□□□□ -0.27
SKA3-201ENST00000298260 HDAC2Q92769 488 aaKnown RBP13.4□□□□□ -0.27
SKA3-201ENST00000298260 ZNF419Q96HQ0 510 aaPredicted RBP13.4□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms