RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 FUBP1Q96AE4 644 aaKnown RBP16.31■□□□□ 0.2
HOXD3-201ENST00000249440 SLC45A3Q96JT2 553 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 C1QTNF3Q9BXJ4 246 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 NUSAP1Q9BXS6 441 aaKnown RBP16.31■□□□□ 0.2
HOXD3-201ENST00000249440 RETREG1Q9H6L5 497 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 PFDN4Q9NQP4 134 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 OLAHQ9NV23 265 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 DUS2Q9NX74 493 aaKnown RBP16.31■□□□□ 0.2
HOXD3-201ENST00000249440 CMTM6Q9NX76 183 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 ETAA1Q9NY74 926 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 ANKRD12Q6UB98 2062 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 MLYCDO95822 493 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 ASLP04424 464 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 CKBP12277 381 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 ELNP15502 786 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 FASP25445 335 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 CST5P28325 142 aaPredicted RBP16.31■□□□□ 0.2
HOXD3-201ENST00000249440 SCNN1BP51168 640 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 KCNQ1P51787 676 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 DIO3P55073 304 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 TFAP2CQ92754 450 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 GPR21Q99679 349 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 SLC52A3Q9NQ40 469 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 UBA2Q9UBT2 640 aaPredicted RBP16.31■□□□□ 0.2
HOXD3-201ENST00000249440 SPO11Q9Y5K1 396 aa16.31■□□□□ 0.2
HOXD3-201ENST00000249440 LAMA2P24043 3122 aaKnown RBP16.31■□□□□ 0.2
HOXD3-201ENST00000249440 A0A1B0GTL3 188 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 A0A1B0GVG6 124 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 MTMR11A4FU01 709 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 ANKRD33BA6NCL7 494 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 C9JVG2 144 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 BTN3A1O00481 513 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 GIPC1O14908 333 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 PFDN6O15212 129 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 INSIG1O15503 277 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 ESRRBO95718 433 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 ZDHHC11BP0C7U3 371 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 PRR35P0CG20 571 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 UROSP10746 265 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 MRPL19P49406 292 aaKnown RBP16.3■□□□□ 0.2
HOXD3-201ENST00000249440 TUBA4AP68366 448 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 GPR17Q13304 367 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 MFSD2AQ8NA29 543 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 MDGA1Q8NFP4 955 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 OR7D4Q8NG98 312 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 HM13Q8TCT9 377 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 SPON2Q9BUD6 331 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 MUC13Q9H3R2 512 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 CLK4Q9HAZ1 481 aaKnown RBP16.3■□□□□ 0.2
HOXD3-201ENST00000249440 AGPAT4Q9NRZ5 378 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 TIMM22Q9Y584 194 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 PCDHA9Q9Y5H5 950 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 ACTL7AQ9Y615 435 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 OAS3Q9Y6K5 1087 aaKnown RBP16.3■□□□□ 0.2
HOXD3-201ENST00000249440 TYW5A2RUC4 315 aaKnown RBP16.3■□□□□ 0.2
HOXD3-201ENST00000249440 H3BSA7 217 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 CDC7O00311 574 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 KLK8O60259 260 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 ACSL4O60488 711 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 VPS26AO75436 327 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 SPATA31D3P0C874 917 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 CDH2P19022 906 aaPredicted RBP16.3■□□□□ 0.2
HOXD3-201ENST00000249440 OXCT1P55809 520 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 NFYCQ13952 458 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 PTPRNQ16849 979 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 SPATA31D4Q6ZUB0 917 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 LINC01599Q8WXQ3 324 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 B3GALT6Q96L58 329 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 CRISPLD1Q9H336 500 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 IKZF3Q9UKT9 509 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 SLC8A2Q9UPR5 921 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 CEPT1Q9Y6K0 416 aa16.3■□□□□ 0.2
HOXD3-201ENST00000249440 ZFP37Q9Y6Q3 630 aaPredicted RBP16.3■□□□□ 0.2
HOXD3-201ENST00000249440 A0A1B0GTW7 788 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 NCF1BA6NI72 391 aaPredicted RBP16.29■□□□□ 0.2
HOXD3-201ENST00000249440 SAC3D1A6NKF1 404 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 NCF1CA8MVU1 366 aaPredicted RBP16.29■□□□□ 0.2
HOXD3-201ENST00000249440 ARPC2O15144 300 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 GPIP06744 558 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 NCF1P14598 390 aaPredicted RBP16.29■□□□□ 0.2
HOXD3-201ENST00000249440 CHRM3P20309 590 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 CCND3P30281 292 aaPredicted RBP16.29■□□□□ 0.2
HOXD3-201ENST00000249440 SLC6A4P31645 630 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 CDH4P55283 916 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 ECT2LQ008S8 904 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 PLOD1Q02809 727 aaPredicted RBP16.29■□□□□ 0.2
HOXD3-201ENST00000249440 RCAN2Q14206 197 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 FBXO48Q5FWF7 155 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 CBR4Q8N4T8 237 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 MYRFLQ96LU7 910 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 BIRC8Q96P09 236 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 CDK5RAP1Q96SZ6 601 aaKnown RBP16.29■□□□□ 0.2
HOXD3-201ENST00000249440 HGH1Q9BTY7 390 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 C9orf16Q9BUW7 83 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 GPR62Q9BZJ7 368 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 ALG2Q9H553 416 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 AIG1Q9NVV5 245 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 ZFC3H1O60293 1989 aaKnown RBP16.29■□□□□ 0.2
HOXD3-201ENST00000249440 NPEPPSL1A6NEC2 478 aa16.29■□□□□ 0.2
HOXD3-201ENST00000249440 KDELR3O43731 214 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms