RNA–Protein interactions for RNA: ENST00000216774.10

SRP54-201, Transcript of signal recognition particle 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SRP54, Length 2,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-201ENST00000216774 CAPGP40121 348 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 LIPEQ05469 1076 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 GALNT3Q14435 633 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 FXNQ16595 210 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 DDR2Q16832 855 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 PDCD4Q53EL6 469 aaKnown RBP13.22□□□□□ -0.29
SRP54-201ENST00000216774 SDHAF4Q5VUM1 108 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 PAQR3Q6TCH7 311 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 ABRAXAS1Q6UWZ7 409 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 PATL1Q86TB9 770 aaKnown RBP13.22□□□□□ -0.29
SRP54-201ENST00000216774 TMEM199Q8N511 208 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 TERB1Q8NA31 727 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 ZNF420Q8TAQ5 688 aaPredicted RBP13.22□□□□□ -0.29
SRP54-201ENST00000216774 TRIB3Q96RU7 358 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 YTHDF1Q9BYJ9 559 aaKnown RBP13.22□□□□□ -0.29
SRP54-201ENST00000216774 CCDC68Q9H2F9 335 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 SEMA4BQ9NPR2 832 aaPredicted RBP13.22□□□□□ -0.29
SRP54-201ENST00000216774 SMPD3Q9NY59 655 aaPredicted RBP13.22□□□□□ -0.29
SRP54-201ENST00000216774 LEF1Q9UJU2 399 aaPredicted RBP13.22□□□□□ -0.29
SRP54-201ENST00000216774 ANAPC2Q9UJX6 822 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 CDH7Q9ULB5 785 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 MED16Q9Y2X0 877 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 A0A1B0GTL3 188 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 FAM92AA1XBS5 289 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 GRXCR2A6NFK2 248 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 CLOCKO15516 846 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 GJB3O75712 270 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 SLC22A3O75751 556 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 IGLV3-27P01718 113 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 ACVRL1P37023 503 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 MAGEA11P43364 429 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 ZFP36L2P47974 494 aaKnown RBP13.22□□□□□ -0.29
SRP54-201ENST00000216774 ZNF140P52738 457 aaPredicted RBP13.22□□□□□ -0.29
SRP54-201ENST00000216774 YBX1P67809 324 aaKnown RBP13.22□□□□□ -0.29
SRP54-201ENST00000216774 SETMARQ53H47 684 aaPredicted RBP13.22□□□□□ -0.29
SRP54-201ENST00000216774 AFTPHQ6ULP2 937 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 CLVS1Q8IUQ0 354 aaPredicted RBP13.22□□□□□ -0.29
SRP54-201ENST00000216774 NKAPQ8N5F7 415 aaKnown RBP13.22□□□□□ -0.29
SRP54-201ENST00000216774 OSCP1Q8WVF1 389 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 CYGBQ8WWM9 190 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 SOCS4Q8WXH5 440 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 FUBP1Q96AE4 644 aaKnown RBP13.22□□□□□ -0.29
SRP54-201ENST00000216774 HIPK3Q9H422 1215 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 LIN28AQ9H9Z2 209 aaKnown RBP13.22□□□□□ -0.29
SRP54-201ENST00000216774 PDFQ9HBH1 243 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 MARCH2Q9P0N8 246 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 ZNF639Q9UID6 485 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 VPS9D1Q9Y2B5 631 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 FADS3Q9Y5Q0 445 aa13.22□□□□□ -0.29
SRP54-201ENST00000216774 UBA6A0AVT1 1052 aaPredicted RBP13.21□□□□□ -0.29
SRP54-201ENST00000216774 GLTPD2A6NH11 291 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 CCDC154A6NI56 674 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 EI24O14681 340 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 PFDN1O60925 122 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 MTHFD1P11586 935 aaKnown RBP13.21□□□□□ -0.29
SRP54-201ENST00000216774 HTR1EP28566 365 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 RPS9P46781 194 aaKnown RBP13.21□□□□□ -0.29
SRP54-201ENST00000216774 GPR15P49685 360 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 ERVK-8P63133 956 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 RING1Q06587 406 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 MTA1Q13330 715 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 MYBPC3Q14896 1274 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 TSNQ15631 228 aaKnown RBP13.21□□□□□ -0.29
SRP54-201ENST00000216774 RABL3Q5HYI8 236 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 ZNF598Q86UK7 904 aaKnown RBP13.21□□□□□ -0.29
SRP54-201ENST00000216774 PROSER1Q86XN7 944 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 DHRSXQ8N5I4 330 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 DNAJB14Q8TBM8 379 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 VPS33AQ96AX1 596 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 PLEKHG4BQ96PX9 1271 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 NPLQ9BXD5 320 aaPredicted RBP13.21□□□□□ -0.29
SRP54-201ENST00000216774 SEZ6LQ9BYH1 1024 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 OSBPL6Q9BZF3 934 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 MUC3BQ9H195 1237 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.21□□□□□ -0.29
SRP54-201ENST00000216774 ZIM2Q9NZV7 527 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 SUN2Q9UH99 717 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 ZNHIT2Q9UHR6 403 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 PCTPQ9UKL6 214 aa13.21□□□□□ -0.29
SRP54-201ENST00000216774 FAM234BA2RU67 622 aa13.2□□□□□ -0.3
SRP54-201ENST00000216774 SNX2O60749 519 aa13.2□□□□□ -0.3
SRP54-201ENST00000216774 NDUFS3O75489 264 aa13.2□□□□□ -0.3
SRP54-201ENST00000216774 BAIAP3O94812 1187 aa13.2□□□□□ -0.3
SRP54-201ENST00000216774 LDLRP01130 860 aa13.2□□□□□ -0.3
SRP54-201ENST00000216774 PYGLP06737 847 aa13.2□□□□□ -0.3
SRP54-201ENST00000216774 ENO2P09104 434 aaPredicted RBP13.2□□□□□ -0.3
SRP54-201ENST00000216774 PIRTP0C851 137 aa13.2□□□□□ -0.3
SRP54-201ENST00000216774 PSMA3P25788 255 aa13.2□□□□□ -0.3
SRP54-201ENST00000216774 RPL10P27635 214 aaKnown RBP13.2□□□□□ -0.3
SRP54-201ENST00000216774 FMO4P31512 558 aa13.2□□□□□ -0.3
SRP54-201ENST00000216774 POLR2JP52435 117 aaKnown RBP13.2□□□□□ -0.3
SRP54-201ENST00000216774 CYBRD1Q53TN4 286 aa13.2□□□□□ -0.3
SRP54-201ENST00000216774 PRR23BQ6ZRT6 265 aa13.2□□□□□ -0.3
SRP54-201ENST00000216774 SYVN1Q86TM6 617 aa13.2□□□□□ -0.3
SRP54-201ENST00000216774 CIR1Q86X95 450 aaPredicted RBP13.2□□□□□ -0.3
SRP54-201ENST00000216774 MIB1Q86YT6 1006 aa13.2□□□□□ -0.3
SRP54-201ENST00000216774 KIAA2013Q8IYS2 634 aa13.2□□□□□ -0.3
SRP54-201ENST00000216774 BBS5Q8N3I7 341 aa13.2□□□□□ -0.3
SRP54-201ENST00000216774 LEMD2Q8NC56 503 aa13.2□□□□□ -0.3
SRP54-201ENST00000216774 PPP1R14BQ96C90 147 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms