RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 IL12RB1P42701 662 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 ARCN1P48444 511 aaKnown RBP10.19□□□□□ -0.78
VPS39-214ENST00000614932 TAS2R40P59535 323 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 DEFA1P59665 94 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 DEFA3P59666 94 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 ABCE1P61221 599 aaKnown RBP10.19□□□□□ -0.78
VPS39-214ENST00000614932 MPP1Q00013 466 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 RFTN1Q14699 578 aaPredicted RBP10.19□□□□□ -0.78
VPS39-214ENST00000614932 DDR2Q16832 855 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 UGP2Q16851 508 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 FASTKD1Q53R41 847 aaKnown RBP10.19□□□□□ -0.78
VPS39-214ENST00000614932 TMEM236Q5W0B7 351 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 KIAA1324Q6UXG2 1013 aaKnown RBP10.19□□□□□ -0.78
VPS39-214ENST00000614932 PAGE2Q7Z2X7 111 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 APBB2Q92870 758 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 BIRC7Q96CA5 298 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 NXNL1Q96CM4 212 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 PIP5K1AQ99755 562 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 UCK2Q9BZX2 261 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 MIR1-1HGQ9H1L0 117 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 EPS8L2Q9H6S3 715 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 TM9SF3Q9HD45 589 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 ASNSD1Q9NWL6 643 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 TJP2Q9UDY2 1190 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 AP4E1Q9UPM8 1137 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 GRIP1Q9Y3R0 1128 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 PAPPA2Q9BXP8 1791 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 TCRBV3S1A0A5B6 114 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 HMX3A6NHT5 357 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 E7ESA3 106 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 XYLBO75191 536 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 VAPBO95292 243 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 SLC4A1P02730 911 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 JUNP05412 331 aaKnown RBP10.19□□□□□ -0.78
VPS39-214ENST00000614932 RBP1P09455 135 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 TRAPPC2P0DI81 140 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 TRAPPC2BP0DI82 140 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 CXCL8P10145 99 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 PROZP22891 400 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 KELP23276 732 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 EDNRBP24530 442 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 ARPP19P56211 112 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 CCNA1P78396 465 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 BAMBIQ13145 260 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 MTM1Q13496 603 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 RIN1Q13671 783 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 CELF3Q5SZQ8 465 aaKnown RBP10.19□□□□□ -0.78
VPS39-214ENST00000614932 RBM20Q5T481 1227 aaKnown RBP10.19□□□□□ -0.78
VPS39-214ENST00000614932 IRAK1BP1Q5VVH5 260 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 MBLAC2Q68D91 279 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 SLC26A11Q86WA9 606 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 PLCZ1Q86YW0 608 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 TMEM174Q8WUU8 243 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 MSANTD3Q96H12 275 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 TNIP3Q96KP6 325 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 HSFY1Q96LI6 401 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 CGRRF1Q99675 332 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 SEC22CQ9BRL7 303 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 WDR83Q9BRX9 315 aaKnown RBP10.19□□□□□ -0.78
VPS39-214ENST00000614932 ROGDIQ9GZN7 287 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 NECTIN3Q9NQS3 549 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 ITM2CQ9NQX7 267 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 ADGRE2Q9UHX3 823 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 DNPEPQ9ULA0 475 aa10.19□□□□□ -0.78
VPS39-214ENST00000614932 ARID2Q68CP9 1835 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 ASS1P00966 412 aaKnown RBP10.18□□□□□ -0.78
VPS39-214ENST00000614932 HOXD4P09016 255 aaPredicted RBP10.18□□□□□ -0.78
VPS39-214ENST00000614932 OSBPP22059 807 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 CRHR1P34998 444 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 PRIM2P49643 509 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 SLC10A2Q12908 348 aaPredicted RBP10.18□□□□□ -0.78
VPS39-214ENST00000614932 LGSNQ5TDP6 509 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 MAP1SQ66K74 1059 aaPredicted RBP10.18□□□□□ -0.78
VPS39-214ENST00000614932 SLFN12LQ6IEE8 588 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 TAB3Q8N5C8 712 aaPredicted RBP10.18□□□□□ -0.78
VPS39-214ENST00000614932 FAM83FQ8NEG4 500 aaPredicted RBP10.18□□□□□ -0.78
VPS39-214ENST00000614932 OR4M2Q8NGB6 313 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 OR13J1Q8NGT2 312 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 NDNFQ8TB73 568 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 SLC7A14Q8TBB6 771 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 C9orf16Q9BUW7 83 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 ANKHQ9HCJ1 492 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 SNX15Q9NRS6 342 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 FBXL12Q9NXK8 326 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 GTF2IRD1Q9UHL9 959 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 AGTPBP1Q9UPW5 1226 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 CSNK1G3Q9Y6M4 447 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 ADGRA2Q96PE1 1338 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 LINC00862A6NCI5 91 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 PRR23AA6NEV1 266 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 H0YCG3 227 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 PMM2O15305 246 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 TLR3O15455 904 aaKnown RBP10.18□□□□□ -0.78
VPS39-214ENST00000614932 KATNA1O75449 491 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 RFPL1O75677 317 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 GABARAPO95166 117 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 CD19P15391 556 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 ZNF250P15622 560 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 CD1EP15812 388 aa10.18□□□□□ -0.78
VPS39-214ENST00000614932 CYP4F2P78329 520 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms