RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 IGDCC4Q8TDY8 1250 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 NR4A3Q92570 626 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 TMEM117Q9H0C3 514 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 ZBTB3Q9H5J0 574 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 INTS7Q9NVH2 962 aaKnown RBP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 LEF1Q9UJU2 399 aaPredicted RBP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 KDM3BQ7LBC6 1761 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 CAPN14A8MX76 684 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 DLGAP1O14490 977 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 SLC2A3P11169 496 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 SULT1E1P49888 294 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 IL18Q14116 193 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 PDK2Q15119 407 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 ZNF597Q96LX8 424 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 FAM129BQ96TA1 746 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 CRISPLD1Q9H336 500 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 LATS2Q9NRM7 1088 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 RCCD1A6NED2 376 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 CTBP2P56545 445 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 GABARAPL2P60520 117 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 ABRQ12979 859 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 BAMBIQ13145 260 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 CBLBQ13191 982 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 AKR1C8PQ5T2L2 129 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 COL13A1Q5TAT6 717 aaPredicted RBP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 PIWIL4Q7Z3Z4 852 aaKnown RBP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 EPHX4Q8IUS5 362 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 ELMO1Q92556 727 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 STRBPQ96SI9 672 aaKnown RBP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 REEP2Q9BRK0 252 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 VRTNQ9H8Y1 702 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 CEMIPQ8WUJ3 1361 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 H3BMQ9 156 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 LCMT2O60294 686 aaKnown RBP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 UBA1P22314 1058 aaKnown RBP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 FEN1P39748 380 aaKnown RBP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 UGT2B15P54855 530 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 CTSWP56202 376 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 SLC1A5Q15758 541 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 PSMD5Q16401 504 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 C10orf62Q5T681 223 aaPredicted RBP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 SMIM5Q71RC9 77 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 ERMP1Q7Z2K6 904 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 RELL1Q8IUW5 271 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 AVL9Q8NBF6 648 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 SPATA20Q8TB22 786 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 COG8Q96MW5 612 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 SEMA6BQ9H3T3 888 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 MAGEL2Q9UJ55 1249 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 TJP1Q07157 1748 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 HSPA12AO43301 675 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 TKTL1P51854 596 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 RPS3AP61247 264 aaKnown RBP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 POU6F1Q14863 301 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 PCDH20Q8N6Y1 951 aaKnown RBP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 UPB1Q9UBR1 384 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 ARHGAP23Q9P227 1491 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 CHURC1-FNTBB4DL54 471 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 OAS1P00973 400 aaKnown RBP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 POLD2P49005 469 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 DCDC1P59894 354 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 CDNFQ49AH0 187 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 PNMA1Q8ND90 353 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 PHF10Q8WUB8 498 aaKnown RBP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 LRTOMTQ8WZ04 291 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 CNPPD1Q9BV87 410 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 TTLL2Q9BWV7 592 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 DYRK1BQ9Y463 629 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 PCDHA1Q9Y5I3 950 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 MED1Q15648 1581 aaPredicted RBP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 AHSA1O95433 338 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 PGAM1P18669 254 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 ELK3P41970 407 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 MTHFRP42898 656 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 INHBEP58166 350 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 ASPRV1Q53RT3 343 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 ZC3HC1Q86WB0 502 aaKnown RBP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 HERVK_113Q902F9 699 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 HDAC10Q969S8 669 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 GMCL1Q96IK5 515 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 CDADC1Q9BWV3 514 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 ZNF518BQ9C0D4 1074 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 SIAEQ9HAT2 523 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 NIT2Q9NQR4 276 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 THG1LQ9NWX6 298 aaKnown RBP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 POU2F3Q9UKI9 436 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 F8W036 122 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 ZNF234Q14588 700 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 FKBP1CQ5VVH2 108 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 ADAMTSL2Q86TH1 951 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 CCDC107Q8WV48 283 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 HSFY1Q96LI6 401 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 LAMB2P55268 1798 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 RPTORQ8N122 1335 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 OR2AT4A6NND4 320 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 SAGP10523 405 aaPredicted RBP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 ALDH9A1P49189 494 aa4.93□□□□□ -1.62
VPS13D-213ENST00000613099 EIF4A1P60842 406 aaKnown RBP4.93□□□□□ -1.62
VPS13D-213ENST00000613099 IKBKEQ14164 716 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms