RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 TTPAP49638 278 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 FOXA1P55317 472 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 CDKN3Q16667 212 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 FUT11Q495W5 492 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 PITRM1Q5JRX3 1037 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 TSPAN33Q86UF1 283 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 RHEBL1Q8TAI7 183 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 HMGCLL1Q8TB92 370 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 EEF1AKMT1Q8WVE0 214 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 C3orf30Q96M34 536 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 GCNAQ96QF7 691 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 BOCQ9BWV1 1114 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 DERL2Q9GZP9 239 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 LINC00597Q9H2U6 94 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 TFB2MQ9H5Q4 396 aaKnown RBP14.38□□□□□ -0.11
VRK3-217ENST00000599538 SARS2Q9NP81 518 aaKnown RBP14.38□□□□□ -0.11
VRK3-217ENST00000599538 HACD3Q9P035 362 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 TSR3Q9UJK0 312 aaKnown RBP14.38□□□□□ -0.11
VRK3-217ENST00000599538 ARHGAP26Q9UNA1 814 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 PKP3Q9Y446 797 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 IRAK3Q9Y616 596 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 WASF2Q9Y6W5 498 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 HELZP42694 1942 aaKnown RBP14.38□□□□□ -0.11
VRK3-217ENST00000599538 A0A0J9YYE9 177 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 C1orf232A0A0U1RR37 186 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 NCF1BA6NI72 391 aaPredicted RBP14.38□□□□□ -0.11
VRK3-217ENST00000599538 NCF1CA8MVU1 366 aaPredicted RBP14.38□□□□□ -0.11
VRK3-217ENST00000599538 TRIM24O15164 1050 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 ECI2O75521 394 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 CDK14O94921 469 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 TRBC1P01850 177 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 GFAPP14136 432 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 NCF1P14598 390 aaPredicted RBP14.38□□□□□ -0.11
VRK3-217ENST00000599538 PRDX6P30041 224 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 PTDSS1P48651 473 aaKnown RBP14.38□□□□□ -0.11
VRK3-217ENST00000599538 CPNE9Q8IYJ1 553 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 PELI3Q8N2H9 469 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 SPPL3Q8TCT6 385 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 USP13Q92995 863 aaPredicted RBP14.38□□□□□ -0.11
VRK3-217ENST00000599538 FUBP1Q96AE4 644 aaKnown RBP14.38□□□□□ -0.11
VRK3-217ENST00000599538 ESAMQ96AP7 390 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 C17orf80Q9BSJ5 609 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 MEAF6Q9HAF1 191 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 EML4Q9HC35 981 aaKnown RBP14.38□□□□□ -0.11
VRK3-217ENST00000599538 SYTL2Q9HCH5 934 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 ZNF510Q9Y2H8 683 aa14.38□□□□□ -0.11
VRK3-217ENST00000599538 RGSL1A5PLK6 1076 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 TRPC5OSA6NMA1 111 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 SUPT3HB4E1H0 165 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 BTN3A1O00481 513 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 KERAO60938 352 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 SUPT3HO75486 399 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 RPSAP08865 295 aaKnown RBP14.37□□□□□ -0.11
VRK3-217ENST00000599538 UGT1A6P19224 532 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 CHRM3P20309 590 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 UGT1A1P22309 533 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 UGT1A4P22310 534 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 UGT1A3P35503 534 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 UGT1A5P35504 534 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 BMPR1AP36894 532 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 AGTR2P50052 363 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 HK3P52790 923 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 RAD51Q06609 339 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 GALNT1Q10472 559 aaPredicted RBP14.37□□□□□ -0.11
VRK3-217ENST00000599538 CAMK1Q14012 370 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 UGT3A2Q3SY77 523 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 ZNF697Q5TEC3 545 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 C1orf146Q5VVC0 180 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 PGM2L1Q6PCE3 622 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 NET1Q7Z628 596 aaPredicted RBP14.37□□□□□ -0.11
VRK3-217ENST00000599538 HPS6Q86YV9 775 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 PAF1Q8N7H5 531 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 CEP70Q8NHQ1 597 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 ACTRT2Q8TDY3 377 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 NRG4Q8WWG1 115 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 CCDC124Q96CT7 223 aaKnown RBP14.37□□□□□ -0.11
VRK3-217ENST00000599538 KCNA7Q96RP8 456 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 RTKNQ9BST9 563 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 EMILIN2Q9BXX0 1053 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 P2RY12Q9H244 342 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 ZFYVE1Q9HBF4 777 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 ZBTB26Q9HCK0 441 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 FBRSL1Q9HCM7 1045 aaKnown RBP14.37□□□□□ -0.11
VRK3-217ENST00000599538 SLCO3A1Q9UIG8 710 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 CDH22Q9UJ99 828 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 RNF112Q9ULX5 631 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 ASB1Q9Y576 335 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 SCN8AQ9UQD0 1980 aa14.37□□□□□ -0.11
VRK3-217ENST00000599538 NEDD8-MDP1E9PL57 170 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 TLL1O43897 1013 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 VPS26AO75436 327 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 PRAMEF1O95521 474 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 PENKP01210 267 aaPredicted RBP14.36□□□□□ -0.11
VRK3-217ENST00000599538 RHOP08100 348 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 EPCAMP16422 314 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 NUDT2P50583 147 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 ACTR3P61158 418 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 TBL3Q12788 808 aaKnown RBP14.36□□□□□ -0.11
VRK3-217ENST00000599538 OR2AP1Q8NGE2 309 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 CFAP61Q8NHU2 1237 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms