RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 MINDY1Q8N5J2 469 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 TRPV1Q8NER1 839 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 RPL10LQ96L21 214 aaKnown RBP16.42■□□□□ 0.22
LIG1-206ENST00000594067 RPRD1AQ96P16 312 aaPredicted RBP16.42■□□□□ 0.22
LIG1-206ENST00000594067 CATSPERZQ9NTU4 200 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 FAM50BQ9Y247 325 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 PTPRDP23468 1912 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 RPP40O75818 363 aaKnown RBP16.42■□□□□ 0.22
LIG1-206ENST00000594067 TYMPP19971 482 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 SLC6A2P23975 617 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 VARSP26640 1264 aaKnown RBP16.42■□□□□ 0.22
LIG1-206ENST00000594067 INPP5AQ14642 412 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 SLC36A3Q495N2 470 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 IFNEQ86WN2 208 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 GIPC3Q8TF64 312 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 FATE1Q969F0 183 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 LRRC58Q96CX6 371 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 MYEOVQ96EZ4 313 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 ASB2Q96Q27 587 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 TRIM15Q9C019 465 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 MUC3BQ9H195 1237 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 CXorf21Q9HAI6 301 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 IKZF3Q9UKT9 509 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 SH3BP1Q9Y3L3 701 aa16.42■□□□□ 0.22
LIG1-206ENST00000594067 AQP12BA6NM10 295 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 SEC24DO94855 1032 aaPredicted RBP16.41■□□□□ 0.22
LIG1-206ENST00000594067 IL10P22301 178 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 ACVR1Q04771 509 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 CLCQ05315 142 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 SFSWAPQ12872 951 aaKnown RBP16.41■□□□□ 0.22
LIG1-206ENST00000594067 PRMT9Q6P2P2 845 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 AQP12AQ8IXF9 295 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 ATP6V0D2Q8N8Y2 350 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 OR4L1Q8NH43 312 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 DNAJB14Q8TBM8 379 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 AARSD1Q9BTE6 412 aaKnown RBP16.41■□□□□ 0.22
LIG1-206ENST00000594067 POLR1EQ9GZS1 481 aaKnown RBP16.41■□□□□ 0.22
LIG1-206ENST00000594067 RPF2Q9H7B2 306 aaKnown RBP16.41■□□□□ 0.22
LIG1-206ENST00000594067 AGPAT4Q9NRZ5 378 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 PCDHB8Q9UN66 801 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 ACTL7AQ9Y615 435 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 RHOBTB1O94844 696 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 TFPTP0C1Z6 253 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 MTHFD1P11586 935 aaKnown RBP16.41■□□□□ 0.22
LIG1-206ENST00000594067 HSD17B1P14061 328 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 PSMA4P25789 261 aaKnown RBP16.41■□□□□ 0.22
LIG1-206ENST00000594067 FMO4P31512 558 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 IL10RBQ08334 325 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 PMS2P3Q13401 168 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 DSC3Q14574 896 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 PAQR3Q6TCH7 311 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 ZNF280BQ86YH2 543 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 CMTR2Q8IYT2 770 aaKnown RBP16.41■□□□□ 0.22
LIG1-206ENST00000594067 TTC9BQ8N6N2 239 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 TNIP2Q8NFZ5 429 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 VPS33AQ96AX1 596 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 DOK1Q99704 481 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 TFB2MQ9H5Q4 396 aaKnown RBP16.41■□□□□ 0.22
LIG1-206ENST00000594067 SDR39U1Q9NRG7 319 aaPredicted RBP16.41■□□□□ 0.22
LIG1-206ENST00000594067 RNF112Q9ULX5 631 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 ZNF711Q9Y462 761 aa16.41■□□□□ 0.22
LIG1-206ENST00000594067 IGLV3-10A0A075B6K4 115 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 RNF103-CHMP3A0A140T963 221 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 GLTPD2A6NH11 291 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 NCF1BA6NI72 391 aaPredicted RBP16.4■□□□□ 0.22
LIG1-206ENST00000594067 NCF1CA8MVU1 366 aaPredicted RBP16.4■□□□□ 0.22
LIG1-206ENST00000594067 BOLA2-SMG1P6H3BVE0 249 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 ARPC2O15144 300 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 DUSP11O75319 330 aaKnown RBP16.4■□□□□ 0.22
LIG1-206ENST00000594067 CRCPO75575 148 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 SOAT2O75908 522 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 CLIC3O95833 236 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 NCF1P14598 390 aaPredicted RBP16.4■□□□□ 0.22
LIG1-206ENST00000594067 OR1E1P30953 314 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 CD97P48960 835 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 SUOXP51687 545 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 SERINC3Q13530 473 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 ZNF235Q14590 738 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 LCN8Q6JVE9 175 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 SCIMPQ6UWF3 145 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 FBXO39Q8N4B4 442 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 KLHDC9Q8NEP7 349 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 GPR150Q8NGU9 434 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 RHEBL1Q8TAI7 183 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 TEX37Q96LM6 180 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 UROC1Q96N76 676 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 GID8Q9NWU2 228 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 MYO16Q9Y6X6 1858 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 H3BMQ9 156 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 MATN4O95460 622 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 FGF1P05230 155 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 CES1P23141 567 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 FASP25445 335 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 HMOX2P30519 316 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 PBX3P40426 434 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 NAA20P61599 178 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 TSNQ15631 228 aaKnown RBP16.4■□□□□ 0.22
LIG1-206ENST00000594067 FUT11Q495W5 492 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 RABL3Q5HYI8 236 aa16.4■□□□□ 0.22
LIG1-206ENST00000594067 ADGRG5Q8IZF4 528 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms