RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 PLA2G15Q8NCC3 412 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 SAP25Q8TEE9 199 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 APOOQ9BUR5 198 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 ABCG8Q9H221 673 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 WDR26Q9H7D7 661 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 PHPT1Q9NRX4 125 aaPredicted RBP17.17■□□□□ 0.34
CLN3-217ENST00000565354 PKP3Q9Y446 797 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 OR1A2Q9Y585 309 aa17.17■□□□□ 0.34
CLN3-217ENST00000565354 RGSL1A5PLK6 1076 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 YKT6O15498 198 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 ECEL1O95672 775 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 APRTP07741 180 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 SPINT3P49223 89 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 TERF1P54274 439 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 SEMA5AQ13591 1074 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 PPP1R7Q15435 360 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 SHBQ15464 509 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 CDKN3Q16667 212 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 ALS2CLQ60I27 953 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 KCTD11Q693B1 232 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 ENPP7Q6UWV6 458 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 KDM7AQ6ZMT4 941 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 RFLNAQ6ZTI6 216 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 TMC3Q7Z5M5 1100 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 PARGQ86W56 976 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 SPATS2Q86XZ4 545 aaKnown RBP17.16■□□□□ 0.34
CLN3-217ENST00000565354 CREG2Q8IUH2 290 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 SLC22A18ASQ8N1D0 253 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 CBARPQ8N350 705 aaPredicted RBP17.16■□□□□ 0.34
CLN3-217ENST00000565354 ZNF592Q92610 1267 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 FGF11Q92914 225 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 RUNDC3BQ96NL0 473 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 DDX47Q9H0S4 455 aaKnown RBP17.16■□□□□ 0.34
CLN3-217ENST00000565354 FAM83DQ9H4H8 585 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 ERVMER34-1Q9H9K5 563 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 DNAJC28Q9NX36 388 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 SPTA1P02549 2419 aa17.16■□□□□ 0.34
CLN3-217ENST00000565354 HECTD1Q9ULT8 2610 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 C2orf81A6NN90 581 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 H3BM21 787 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 PDE2AO00408 941 aaPredicted RBP17.15■□□□□ 0.34
CLN3-217ENST00000565354 STX7O15400 261 aaKnown RBP17.15■□□□□ 0.34
CLN3-217ENST00000565354 CRTAMO95727 393 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 KELP23276 732 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 DPTQ07507 201 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 CDH17Q12864 832 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 GPS1Q13098 491 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 NFATC4Q14934 902 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 PCSK4Q6UW60 755 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 MACC1Q6ZN28 852 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 NYAP1Q6ZVC0 841 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 HEATR4Q86WZ0 1026 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 KLHL7Q8IXQ5 586 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 KLHDC8BQ8IXV7 354 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 EID2Q8N6I1 236 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 SCAMP4Q969E2 229 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 RIOK2Q9BVS4 552 aaKnown RBP17.15■□□□□ 0.34
CLN3-217ENST00000565354 SPATA16Q9BXB7 569 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 CDH19Q9H159 772 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 BPIFA1Q9NP55 256 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 MOSPD1Q9UJG1 213 aa17.15■□□□□ 0.34
CLN3-217ENST00000565354 SPTY2D1-AS1A0A0U1RR47 76 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 CCDC188H7C350 402 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 J3QKU1 62 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 KIF2AO00139 706 aaPredicted RBP17.14■□□□□ 0.33
CLN3-217ENST00000565354 AURKAO14965 403 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 FANCGO15287 622 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 BRINP1O60477 761 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 TUBB4AP04350 444 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 HMGCLP35914 325 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 KIAA1024LP59773 190 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 PDE1BQ01064 536 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 CFHR1Q03591 330 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 TLE3Q04726 772 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 SEPT6Q14141 434 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 TAF1AQ15573 450 aaPredicted RBP17.14■□□□□ 0.33
CLN3-217ENST00000565354 ZNF542PQ5EBM4 170 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 ZDHHC20Q5W0Z9 365 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 NLRP8Q86W28 1048 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 OR52K1Q8NGK4 314 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 BRSK1Q8TDC3 778 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 WDR92Q96MX6 357 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 ARNT2Q9HBZ2 717 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.14■□□□□ 0.33
CLN3-217ENST00000565354 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.14■□□□□ 0.33
CLN3-217ENST00000565354 KLQ9UEF7 1012 aa17.14■□□□□ 0.33
CLN3-217ENST00000565354 K7ESM1 405 aa17.13■□□□□ 0.33
CLN3-217ENST00000565354 INPP4BO15327 924 aa17.13■□□□□ 0.33
CLN3-217ENST00000565354 BUD23O43709 281 aaKnown RBP17.13■□□□□ 0.33
CLN3-217ENST00000565354 MYCLP1P12525 358 aaPredicted RBP17.13■□□□□ 0.33
CLN3-217ENST00000565354 TPH1P17752 444 aa17.13■□□□□ 0.33
CLN3-217ENST00000565354 LPOP22079 712 aaPredicted RBP17.13■□□□□ 0.33
CLN3-217ENST00000565354 TEAD1P28347 426 aa17.13■□□□□ 0.33
CLN3-217ENST00000565354 EPHA8P29322 1005 aaPredicted RBP17.13■□□□□ 0.33
CLN3-217ENST00000565354 SPAM1P38567 509 aa17.13■□□□□ 0.33
CLN3-217ENST00000565354 HNRNPKP61978 463 aaKnown RBP eCLIP17.13■□□□□ 0.33
CLN3-217ENST00000565354 SARNPP82979 210 aaKnown RBP17.13■□□□□ 0.33
CLN3-217ENST00000565354 CDK3Q00526 305 aa17.13■□□□□ 0.33
CLN3-217ENST00000565354 PPARDQ03181 441 aa17.13■□□□□ 0.33
CLN3-217ENST00000565354 ILKQ13418 452 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms