RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 COL26A1Q96A83 441 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 FAM131CQ96AQ9 280 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 PPP1R16AQ96I34 528 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 EBNA1BP2Q99848 306 aaKnown RBP11.78□□□□□ -0.52
LDLR-212ENST00000560467 MYOCQ99972 504 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 ZDHHC6Q9H6R6 413 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 CASS4Q9NQ75 786 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 HACD3Q9P035 362 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 LHX3Q9UBR4 397 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 PCDHB1Q9Y5F3 818 aa11.78□□□□□ -0.52
LDLR-212ENST00000560467 A0A087WUV0 522 aaPredicted RBP11.77□□□□□ -0.53
LDLR-212ENST00000560467 LOC285095A0A1B0GVY8 99 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 HEATR9A2RTY3 570 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 C2orf81A6NN90 581 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 C1QTNF3-AMACRE9PGA6 284 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 MUSKO15146 869 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 PLRG1O43660 514 aaKnown RBP11.77□□□□□ -0.53
LDLR-212ENST00000560467 USP12O75317 370 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 PGAM1P18669 254 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 ACP1P24666 158 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 MGAT1P26572 445 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 ECHS1P30084 290 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 STX2P32856 288 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 ELK3P41970 407 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 CCNHP51946 323 aaPredicted RBP11.77□□□□□ -0.53
LDLR-212ENST00000560467 CXADRP78310 365 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 CNTN1Q12860 1018 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 SEPT6Q14141 434 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 SLC1A5Q15758 541 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 SKIDA1Q1XH10 827 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 TBC1D25Q3MII6 688 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 HSP90B2PQ58FF3 399 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 PCID2Q5JVF3 399 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 FNBP1LQ5T0N5 605 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 AGBL4Q5VU57 503 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 KDELC1Q6UW63 502 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 GDPD4Q6W3E5 623 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 KDM7AQ6ZMT4 941 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 C3orf62Q6ZUJ4 267 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 GPR155Q7Z3F1 870 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 CAND1Q86VP6 1230 aaKnown RBP11.77□□□□□ -0.53
LDLR-212ENST00000560467 FBXO36Q8NEA4 188 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 HCAR2Q8TDS4 363 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 CDKL2Q92772 493 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 NAF1Q96HR8 494 aaKnown RBP11.77□□□□□ -0.53
LDLR-212ENST00000560467 MRGPRX2Q96LB1 330 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 APOL2Q9BQE5 337 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 TRABDQ9H4I3 376 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 SUV39H2Q9H5I1 410 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 VIPAS39Q9H9C1 493 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 PPCSQ9HAB8 311 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 ARNT2Q9HBZ2 717 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 PPANQ9NQ55 473 aaKnown RBP11.77□□□□□ -0.53
LDLR-212ENST00000560467 UCKL1Q9NWZ5 548 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 IL36AQ9UHA7 158 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 CHKBQ9Y259 395 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 PCDHGC4Q9Y5F7 938 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 ACTL7AQ9Y615 435 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 FAM169AQ9Y6X4 670 aa11.77□□□□□ -0.53
LDLR-212ENST00000560467 MAST4O15021 2626 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 MGAQ8IWI9 3026 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 ANKRD66B4E2M5 251 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 E7ESA3 106 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 FFAR2O15552 330 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 OPA1O60313 960 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 AVILO75366 819 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 ACSL3O95573 720 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 CD160O95971 181 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 MT-CO3P00414 261 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 TPH1P17752 444 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 CR2P20023 1033 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 HSD17B3P37058 310 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 CBLBQ13191 982 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 STAT4Q14765 748 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 CASP8Q14790 479 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 KYNUQ16719 465 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 SIRPB2Q5JXA9 342 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 SPANXN3Q5MJ09 141 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 HP1BP3Q5SSJ5 553 aaPredicted RBP11.76□□□□□ -0.53
LDLR-212ENST00000560467 LGSNQ5TDP6 509 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 BRAT1Q6PJG6 821 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 DPY19L3Q6ZPD9 716 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 Q6ZVU0 165 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 USP45Q70EL2 814 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 IQCHQ86VS3 1027 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 TRIM69Q86WT6 500 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 CAMK1DQ8IU85 385 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 KLHDC8BQ8IXV7 354 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 SLC25A45Q8N413 288 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 LPCAT1Q8NF37 534 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 KLK6Q92876 244 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 CFAP36Q96G28 342 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 C9orf72Q96LT7 481 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 TDRD1Q9BXT4 1180 aaKnown RBP11.76□□□□□ -0.53
LDLR-212ENST00000560467 STMN4Q9H169 189 aaPredicted RBP11.76□□□□□ -0.53
LDLR-212ENST00000560467 CDC42EP4Q9H3Q1 356 aaKnown RBP11.76□□□□□ -0.53
LDLR-212ENST00000560467 TXNDC16Q9P2K2 825 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 PHTF1Q9UMS5 762 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 CHMP2BQ9UQN3 213 aa11.76□□□□□ -0.53
LDLR-212ENST00000560467 DMTF1Q9Y222 760 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms