RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 KIR2DS5A0A0G2JLQ3 304 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 A0A0G2JNG1 304 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 A0A0U1RQS6 177 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 RGSL1A5PLK6 1076 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 KIR2DS3K7RE56 304 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 MYO1FO00160 1098 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 POLR1CO15160 346 aaPredicted RBP9.09□□□□□ -0.95
HDDC3-204ENST00000559834 MATN3O15232 486 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 NKX2-8O15522 239 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 DNAJC6O75061 913 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 MAP3K6O95382 1288 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 CLDN7O95471 211 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 SKILP12757 684 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 CCNCP24863 283 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 CASRP41180 1078 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 GARSP41250 739 aaKnown RBP9.09□□□□□ -0.95
HDDC3-204ENST00000559834 SSR1P43307 286 aaKnown RBP9.09□□□□□ -0.95
HDDC3-204ENST00000559834 NFATC2Q13469 925 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 KIR2DS5Q14953 304 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 IFI16Q16666 785 aaKnown RBP9.09□□□□□ -0.95
HDDC3-204ENST00000559834 CRTC2Q53ET0 693 aaPredicted RBP9.09□□□□□ -0.95
HDDC3-204ENST00000559834 ANKRD20A8PQ5CZ79 823 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 TRIM74Q86UV6 250 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 ZNF761Q86XN6 746 aaPredicted RBP9.09□□□□□ -0.95
HDDC3-204ENST00000559834 PLXDC1Q8IUK5 500 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 ESX1Q8N693 406 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 AOPEPQ8N6M6 819 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 NIPA2Q8N8Q9 360 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 C9orf43Q8TAL5 461 aaPredicted RBP9.09□□□□□ -0.95
HDDC3-204ENST00000559834 FATE1Q969F0 183 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 PMEPA1Q969W9 287 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 LYSMD1Q96S90 227 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 AGAP2Q99490 1192 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 CTRCQ99895 268 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 SPRY4Q9C004 299 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 FAM83DQ9H4H8 585 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 PCDH9Q9HC56 1237 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 PKD2L2Q9NZM6 624 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 CHKBQ9Y259 395 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 PCDHB3Q9Y5E6 796 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 SDK2Q58EX2 2172 aa9.09□□□□□ -0.95
HDDC3-204ENST00000559834 ATMQ13315 3056 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 C1orf232A0A0U1RR37 186 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 CYSRT1A8MQ03 144 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 GRID2O43424 1007 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 SNX2O60749 519 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 STK17BO94768 372 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 PRLP01236 227 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 ATP1A1P05023 1023 aaKnown RBP9.08□□□□□ -0.96
HDDC3-204ENST00000559834 PRKAR1AP10644 381 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 ACP5P13686 325 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 F3P13726 295 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 TCF4P15884 667 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 TCN2P20062 427 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 MX2P20592 715 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 IL4RP24394 825 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 MAPK9P45984 424 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 DSC2Q02487 901 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 TYRO3Q06418 890 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 SRSF1Q07955 248 aaKnown RBP eCLIP9.08□□□□□ -0.96
HDDC3-204ENST00000559834 GALNT2Q10471 571 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 CDC20Q12834 499 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 UBAP2LQ14157 1087 aaKnown RBP9.08□□□□□ -0.96
HDDC3-204ENST00000559834 MAP7Q14244 749 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 PDK2Q15119 407 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 SKIDA1Q1XH10 827 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 CCDC183Q5T5S1 534 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 ALG1LQ6GMV1 187 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 PHYKPLQ8IUZ5 450 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 MAP7D3Q8IWC1 876 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.08□□□□□ -0.96
HDDC3-204ENST00000559834 KCTD6Q8NC69 237 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 LPCAT1Q8NF37 534 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 MAML1Q92585 1016 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 TSGA13Q96PP4 275 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 MLPHQ9BV36 600 aaPredicted RBP9.08□□□□□ -0.96
HDDC3-204ENST00000559834 TDRD1Q9BXT4 1180 aaKnown RBP9.08□□□□□ -0.96
HDDC3-204ENST00000559834 ADGRE3Q9BY15 652 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 CARD9Q9H257 536 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 RAD18Q9NS91 495 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 TBC1D29Q9UFV1 150 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 ANAPC7Q9UJX3 599 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 KCNK6Q9Y257 313 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 PRKAB1Q9Y478 270 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 TTLL3Q9Y4R7 772 aa9.08□□□□□ -0.96
HDDC3-204ENST00000559834 TMEM184BQ9Y519 407 aaPredicted RBP9.08□□□□□ -0.96
HDDC3-204ENST00000559834 LOC101059948A0A1B0GTJ6 334 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 LILRA5A6NI73 299 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 ANKRD66B4E2M5 251 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 GPR89AB7ZAQ6 455 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 TOX3O15405 576 aaPredicted RBP9.07□□□□□ -0.96
HDDC3-204ENST00000559834 NUAK1O60285 661 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 EML2O95834 649 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 MBD3O95983 291 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 NTRK1P04629 796 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 GPR89BP0CG08 455 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 AMD1P17707 334 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 XRCC1P18887 633 aaPredicted RBP9.07□□□□□ -0.96
HDDC3-204ENST00000559834 SPINT3P49223 89 aa9.07□□□□□ -0.96
HDDC3-204ENST00000559834 CLCNKAP51800 687 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms