RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, human

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13C-208	ENST00000559119	NDUFAF8	A1L188	74 aa		4.19	□□□□□ -1.74
VPS13C-208	ENST00000559119	KRTAP16-1	A8MUX0	517 aa		4.19	□□□□□ -1.74
VPS13C-208	ENST00000559119	ARHGEF9	O43307	516 aa		4.19	□□□□□ -1.74
VPS13C-208	ENST00000559119	ITGA9	Q13797	1035 aa		4.19	□□□□□ -1.74
VPS13C-208	ENST00000559119	BBS12	Q6ZW61	710 aa		4.19	□□□□□ -1.74
VPS13C-208	ENST00000559119	PLEKHM3	Q6ZWE6	761 aa		4.19	□□□□□ -1.74
VPS13C-208	ENST00000559119	LRRC8D	Q7L1W4	858 aa		4.19	□□□□□ -1.74
VPS13C-208	ENST00000559119	ADSSL1	Q8N142	457 aa		4.19	□□□□□ -1.74
VPS13C-208	ENST00000559119	BEST3	Q8N1M1	668 aa		4.19	□□□□□ -1.74
VPS13C-208	ENST00000559119	ACVR1C	Q8NER5	493 aa		4.19	□□□□□ -1.74
VPS13C-208	ENST00000559119	RHBDF1	Q96CC6	855 aa		4.19	□□□□□ -1.74
VPS13C-208	ENST00000559119	ZNF653	Q96CK0	615 aa		4.19	□□□□□ -1.74
VPS13C-208	ENST00000559119	ZNF689	Q96CS4	500 aa	Predicted RBP	4.19	□□□□□ -1.74
VPS13C-208	ENST00000559119	FBXL2	Q9UKC9	423 aa		4.19	□□□□□ -1.74
VPS13C-208	ENST00000559119	HSF4	Q9ULV5	492 aa		4.19	□□□□□ -1.74
VPS13C-208	ENST00000559119	PADI3	Q9ULW8	664 aa		4.19	□□□□□ -1.74
VPS13C-208	ENST00000559119	JRKL	Q9Y4A0	524 aa		4.19	□□□□□ -1.74
VPS13C-208	ENST00000559119	CEPT1	Q9Y6K0	416 aa		4.19	□□□□□ -1.74
VPS13C-208	ENST00000559119	TAF4	O00268	1085 aa		4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	SH2B2	O14492	632 aa	Predicted RBP	4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	VCY	O14598	125 aa		4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	ZNF821	O75541	412 aa	Predicted RBP	4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	CD48	P09326	243 aa		4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	CSF2RA	P15509	400 aa		4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	ZNF26	P17031	533 aa	Predicted RBP	4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	PSMC2	P35998	433 aa	Known RBP	4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	ARCN1	P48444	511 aa	Known RBP	4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	GNAQ	P50148	359 aa		4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	MYLK3	Q32MK0	819 aa		4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	DCST1	Q5T197	706 aa		4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	TAAR8	Q969N4	342 aa		4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	PABPC5	Q96DU9	382 aa	Known RBP	4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	SLC39A13	Q96H72	371 aa		4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	TRIM15	Q9C019	465 aa		4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	LRMDA	Q9H2I8	198 aa		4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	ERVMER34-1	Q9H9K5	563 aa		4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	SEBOX	Q9HB31	216 aa	Predicted RBP	4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	ZDHHC18	Q9NUE0	388 aa		4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	TCP11L1	Q9NUJ3	509 aa		4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	PAK5	Q9P286	719 aa		4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119	SCIN	Q9Y6U3	715 aa		4.18	□□□□□ -1.74
VPS13C-208	ENST00000559119		A0A0J9YWU9	116 aa		4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	TTC36	A6NLP5	189 aa		4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	HS3ST1	O14792	307 aa		4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	COX7A2	P14406	83 aa		4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	AZU1	P20160	251 aa		4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	MLLT10	P55197	1068 aa		4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	DSCR10	P59022	87 aa		4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	UFM1	P61960	85 aa		4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	COG7	P83436	770 aa		4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	UBE3A	Q05086	875 aa		4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	CACNA2D4	Q7Z3S7	1137 aa		4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	DNAAF4	Q8WXU2	420 aa		4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	KLHL15	Q96M94	604 aa		4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	FGF22	Q9HCT0	170 aa		4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	SLC7A10	Q9NS82	523 aa		4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	ACSS1	Q9NUB1	689 aa	Predicted RBP	4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	ADPRHL2	Q9NX46	363 aa		4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	AAR2	Q9Y312	384 aa	Known RBP	4.17	□□□□□ -1.74
VPS13C-208	ENST00000559119	IGKV6D-41	A0A0C4DH26	115 aa		4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	USP17L23	D6RBM5	183 aa		4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	IFNL4	K9M1U5	179 aa		4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	NR3C1	P04150	777 aa		4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	HOXB5	P09067	269 aa		4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	MAP2K2	P36507	400 aa		4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	TRAPPC10	P48553	1259 aa		4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	ACVR2B	Q13705	512 aa		4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	TMEM187	Q14656	261 aa		4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	DECR1	Q16698	335 aa		4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	USP41	Q3LFD5	358 aa		4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	C6orf141	Q5SZD1	244 aa		4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	C18orf63	Q68DL7	685 aa		4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	FAAP20	Q6NZ36	180 aa		4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	SPATA5	Q8NB90	893 aa		4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	DDHD1	Q8NEL9	900 aa		4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	APBB2	Q92870	758 aa		4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	LBHD1	Q9BQE6	289 aa	Predicted RBP	4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119	MRPS28	Q9Y2Q9	187 aa	Known RBP	4.16	□□□□□ -1.74
VPS13C-208	ENST00000559119		A0A1W2PPI3	338 aa		4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	DUXA	A6NLW8	204 aa		4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	PDE9A	O76083	593 aa		4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	NR2C2	P49116	596 aa		4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	CLDN20	P56880	219 aa		4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	RUNX1T1	Q06455	604 aa		4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	KIR2DS3	Q14952	304 aa		4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	TCTE1	Q5JU00	501 aa		4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	ZCCHC10	Q8TBK6	192 aa		4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	ZNF473	Q8WTR7	871 aa	Known RBP	4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	PHF21A	Q96BD5	680 aa		4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	ABHD8	Q96I13	439 aa		4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	NEUROD6	Q96NK8	337 aa		4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	TMEM47	Q9BQJ4	181 aa		4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	CDK19	Q9BWU1	502 aa		4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	GLIS2	Q9BZE0	524 aa	Predicted RBP	4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	RAD21L1	Q9H4I0	556 aa		4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	C2orf42	Q9NWW7	574 aa		4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	SMCHD1	A6NHR9	2005 aa		4.15	□□□□□ -1.75
VPS13C-208	ENST00000559119	OR5K3	A6NET4	321 aa		4.14	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms