RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 SOAT2O75908 522 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 MATN4O95460 622 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 VNN2O95498 520 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 MLYCDO95822 493 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 CHEK2O96017 543 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 FESP07332 822 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 GALTP07902 379 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 ATF6P18850 670 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 CR2P20023 1033 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 LPOP22079 712 aaPredicted RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 CLCN4P51793 760 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 CHN2P52757 468 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 PKNOX1P55347 436 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 FOXM1Q08050 763 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 LCP2Q13094 533 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 IHHQ14623 411 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 PDK3Q15120 406 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 KIF19Q2TAC6 998 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 USP41Q3LFD5 358 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 ANKS6Q68DC2 871 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 ZNF549Q6P9A3 640 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 SPATA19Q7Z5L4 167 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 LDB1Q86U70 411 aaPredicted RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 SPATA24Q86W54 205 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 HERC6Q8IVU3 1022 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 MIER2Q8N344 545 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 RYBPQ8N488 228 aaPredicted RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 CHCHD4Q8N4Q1 142 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 GOLM1Q8NBJ4 401 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 OR52K2Q8NGK3 314 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 OR13C4Q8NGS5 318 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 TWIST2Q8WVJ9 160 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 LPGAT1Q92604 370 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 EXT2Q93063 718 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 RMDN1Q96DB5 314 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 DUS3LQ96G46 650 aaKnown RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 ZNF512Q96ME7 567 aaPredicted RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 HOPXQ9BPY8 73 aaPredicted RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 C1QTNF3Q9BXJ4 246 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 CFHR5Q9BXR6 569 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 TDRD1Q9BXT4 1180 aaKnown RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 YIPF3Q9GZM5 350 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 MUC13Q9H3R2 512 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 SUDS3Q9H7L9 328 aaPredicted RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 TMEM45AQ9NWC5 275 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 GID8Q9NWU2 228 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 TRPM5Q9NZQ8 1165 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 CCDC167Q9P0B6 97 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 AGO1Q9UL18 857 aaKnown RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 KCTD3Q9Y597 815 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 OAS3Q9Y6K5 1087 aaKnown RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 A0A0D9SEW6 157 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 TTC24A2A3L6 582 aaPredicted RBP7.23□□□□□ -1.25
VPS13C-206ENST00000558338 DYTNA2CJ06 578 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 TBKBP1A7MCY6 615 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 H7C0S8 307 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 UBXN8O00124 270 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 CCL22O00626 93 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 TXNDC9O14530 226 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 UBFD1O14562 309 aaKnown RBP7.23□□□□□ -1.25
VPS13C-206ENST00000558338 NBNO60934 754 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 CAPNS1P04632 268 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 IDO1P14902 403 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 LBPP18428 481 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 CORO1AP31146 461 aaKnown RBP7.23□□□□□ -1.25
VPS13C-206ENST00000558338 SLC6A4P31645 630 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 DPP6P42658 865 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 KCNQ1P51787 676 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 ADARP55265 1226 aaKnown RBP7.23□□□□□ -1.25
VPS13C-206ENST00000558338 FOLH1Q04609 750 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 BNIP2Q12982 314 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 GRIK2Q13002 908 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 VEPH1Q14D04 833 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 ARHGEF6Q15052 776 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 TAF12Q16514 161 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 LRRC36Q1X8D7 754 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 TPGS2Q68CL5 300 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 TICAM1Q8IUC6 712 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 CFAP52Q8N1V2 620 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 DBF4BQ8NFT6 615 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 OR7D4Q8NG98 312 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 TRMT2BQ96GJ1 504 aaKnown RBP7.23□□□□□ -1.25
VPS13C-206ENST00000558338 TUBGCP5Q96RT8 1024 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 C19orf43Q9BQ61 176 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 SPON2Q9BUD6 331 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 CRISPLD1Q9H336 500 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 MID1IP1Q9NPA3 183 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 POLR3BQ9NW08 1133 aaPredicted RBP7.23□□□□□ -1.25
VPS13C-206ENST00000558338 PLK2Q9NYY3 685 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 TMEM181Q9P2C4 612 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 AFF4Q9UHB7 1163 aaKnown RBP7.23□□□□□ -1.25
VPS13C-206ENST00000558338 TRMT6Q9UJA5 497 aaKnown RBP7.23□□□□□ -1.25
VPS13C-206ENST00000558338 TBC1D30Q9Y2I9 924 aa7.23□□□□□ -1.25
VPS13C-206ENST00000558338 C15orf38-AP3S2A0A0A6YYH1 394 aa7.22□□□□□ -1.25
VPS13C-206ENST00000558338 A0A0J9YYE9 177 aa7.22□□□□□ -1.25
VPS13C-206ENST00000558338 SMIM31A0A1B0GVY4 71 aa7.22□□□□□ -1.25
VPS13C-206ENST00000558338 ZNF840PA6NDX5 716 aa7.22□□□□□ -1.25
VPS13C-206ENST00000558338 H3BNC9 293 aa7.22□□□□□ -1.25
VPS13C-206ENST00000558338 PIP5K1BO14986 540 aa7.22□□□□□ -1.25
VPS13C-206ENST00000558338 ANGPT2O15123 496 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms