RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 RAD23AP54725 363 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 POU4F1Q01851 419 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 SPIDRQ14159 915 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 SNX17Q15036 470 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 ALKAL1Q6UXT8 129 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 DPP9Q86TI2 863 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 MIB1Q86YT6 1006 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 REM2Q8IYK8 340 aaPredicted RBP12.28□□□□□ -0.44
LDLR-205ENST00000557933 HM13Q8TCT9 377 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 FIG4Q92562 907 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 PSMG2Q969U7 264 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 CENPNQ96H22 339 aaPredicted RBP12.28□□□□□ -0.44
LDLR-205ENST00000557933 COX4I2Q96KJ9 171 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 MYOCQ99972 504 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 TSPYL2Q9H2G4 693 aaPredicted RBP12.28□□□□□ -0.44
LDLR-205ENST00000557933 VPS51Q9UID3 782 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 CNOT11Q9UKZ1 510 aaKnown RBP12.28□□□□□ -0.44
LDLR-205ENST00000557933 ZNF232Q9UNY5 417 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 TRIM17Q9Y577 477 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 SQORQ9Y6N5 450 aa12.28□□□□□ -0.44
LDLR-205ENST00000557933 CCL15-CCL14A0A0B4J2E2 113 aa12.27□□□□□ -0.44
LDLR-205ENST00000557933 XPNPEP2O43895 674 aa12.27□□□□□ -0.44
LDLR-205ENST00000557933 SMIM10L2AP0DMW4 78 aa12.27□□□□□ -0.44
LDLR-205ENST00000557933 SMIM10L2BP0DMW5 78 aa12.27□□□□□ -0.44
LDLR-205ENST00000557933 DARSP14868 501 aaKnown RBP12.27□□□□□ -0.44
LDLR-205ENST00000557933 AXLP30530 894 aa12.27□□□□□ -0.44
LDLR-205ENST00000557933 FMO4P31512 558 aa12.27□□□□□ -0.44
LDLR-205ENST00000557933 PIGAP37287 484 aa12.27□□□□□ -0.44
LDLR-205ENST00000557933 HADHAP40939 763 aa12.27□□□□□ -0.44
LDLR-205ENST00000557933 OPRL1P41146 370 aa12.27□□□□□ -0.44
LDLR-205ENST00000557933 HK2P52789 917 aa12.27□□□□□ -0.44
LDLR-205ENST00000557933 CCL15Q16663 113 aa12.27□□□□□ -0.44
LDLR-205ENST00000557933 BHLHA9Q7RTU4 235 aa12.27□□□□□ -0.44
LDLR-205ENST00000557933 R3HCC1LQ7Z5L2 792 aaKnown RBP12.27□□□□□ -0.44
LDLR-205ENST00000557933 CILP2Q8IUL8 1156 aa12.27□□□□□ -0.44
LDLR-205ENST00000557933 SEPT8Q92599 483 aa12.27□□□□□ -0.44
LDLR-205ENST00000557933 SEZ6LQ9BYH1 1024 aa12.27□□□□□ -0.44
LDLR-205ENST00000557933 POLR3BQ9NW08 1133 aaPredicted RBP12.27□□□□□ -0.44
LDLR-205ENST00000557933 PADI4Q9UM07 663 aa12.27□□□□□ -0.44
LDLR-205ENST00000557933 IQCF5A8MTL0 148 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 NOL3O60936 208 aaKnown RBP12.27□□□□□ -0.45
LDLR-205ENST00000557933 SOAT2O75908 522 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 SNAI1O95863 264 aaPredicted RBP12.27□□□□□ -0.45
LDLR-205ENST00000557933 CD4P01730 458 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 ALBP02768 609 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 ITGB1P05556 798 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 MMP3P08254 477 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 IMPDH1P20839 514 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 CAPGP40121 348 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 HALP42357 657 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 FAM110CQ1W6H9 321 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 ALFQ53S48 1182 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 CCDC81Q6ZN84 652 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 IGFN1Q86VF2 1251 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 LRRTM3Q86VH5 581 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 PPTC7Q8NI37 304 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 BIRC7Q96CA5 298 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 BIRC8Q96P09 236 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 CARS2Q9HA77 564 aaKnown RBP12.27□□□□□ -0.45
LDLR-205ENST00000557933 PNMA8BQ9ULN7 279 aaPredicted RBP12.27□□□□□ -0.45
LDLR-205ENST00000557933 GOLGA4Q13439 2230 aaKnown RBP12.27□□□□□ -0.45
LDLR-205ENST00000557933 A0A087X1B8 175 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 PDHXO00330 501 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 SLC22A2O15244 555 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 NCAM2O15394 837 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 ANXA9O76027 345 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 B3GAT3O94766 335 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 BCL10O95999 233 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 B3GALT4O96024 378 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 PAMP19021 973 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 CCNA2P20248 432 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 IL12AP29459 219 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 ADSLP30566 484 aaPredicted RBP12.27□□□□□ -0.45
LDLR-205ENST00000557933 GPR15P49685 360 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 NKX2-5P52952 324 aaPredicted RBP12.27□□□□□ -0.45
LDLR-205ENST00000557933 TRAP1Q12931 704 aaKnown RBP12.27□□□□□ -0.45
LDLR-205ENST00000557933 AQP6Q13520 282 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 ATP6AP1Q15904 470 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 UBXN11Q5T124 520 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 FAM45BPQ6NSW5 357 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 PAQR3Q6TCH7 311 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 RANBP10Q6VN20 620 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 GALNT5Q7Z7M9 940 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 SLC7A5P1Q8MH63 180 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 TRPV3Q8NET8 790 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 OR2T11Q8NH01 316 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 CLHC1Q8NHS4 586 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 FAM45AQ8TCE6 357 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 ELMO1Q92556 727 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 HMCESQ96FZ2 354 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 MYRFLQ96LU7 910 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 C9orf16Q9BUW7 83 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 VPS45Q9NRW7 570 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 DAPK2Q9UIK4 370 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 VPS4AQ9UN37 437 aa12.27□□□□□ -0.45
LDLR-205ENST00000557933 OAS3Q9Y6K5 1087 aaKnown RBP12.27□□□□□ -0.45
LDLR-205ENST00000557933 NPEPPSL1A6NEC2 478 aa12.26□□□□□ -0.45
LDLR-205ENST00000557933 SERPINB7O75635 380 aa12.26□□□□□ -0.45
LDLR-205ENST00000557933 INMTO95050 263 aa12.26□□□□□ -0.45
LDLR-205ENST00000557933 LDLRP01130 860 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms