RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 SP3Q02447 781 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 EPS8Q12929 822 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 CBX3Q13185 183 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 GRB7Q14451 532 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 RBM48Q5RL73 367 aaKnown RBP16.21■□□□□ 0.19
SHMT2-232ENST00000557487 COL13A1Q5TAT6 717 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-232ENST00000557487 BROXQ5VW32 411 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 METTL23Q86XA0 190 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 AADATQ8N5Z0 425 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 CHPT1Q8WUD6 406 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 TADA1Q96BN2 335 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 BRINP2Q9C0B6 783 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 GPN2Q9H9Y4 310 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-232ENST00000557487 AIG1Q9NVV5 245 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 ZIM2Q9NZV7 527 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 GMPR2Q9P2T1 348 aaKnown RBP16.21■□□□□ 0.19
SHMT2-232ENST00000557487 MAGEL2Q9UJ55 1249 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 A0A1W2PPW3 197 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 E9PAM4 449 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 TPST1O60507 370 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 KERAO60938 352 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 DNAJB5O75953 348 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 SEC14L2O76054 403 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 GLP2RO95838 553 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 PEX11BO96011 259 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 CHEK2O96017 543 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 HPRP00739 348 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 CYBBP04839 570 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 ENO2P09104 434 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-232ENST00000557487 ODC1P11926 461 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 ZNF37AP17032 561 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-232ENST00000557487 UGT1A6P19224 532 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 CDH13P55290 713 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 CAPRIN1Q14444 709 aaKnown RBP16.21■□□□□ 0.19
SHMT2-232ENST00000557487 MFSD10Q14728 455 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 ARTNQ5T4W7 220 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 MARC1Q5VT66 337 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 ANKRD26P1Q6NSI1 321 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 TMEM26Q6ZUK4 368 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 STAG3L4Q8TBR4 150 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 FAM110BQ8TC76 370 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 KIAA1191Q96A73 305 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 ATOH8Q96SQ7 321 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 C1QTNF3Q9BXJ4 246 aa16.21■□□□□ 0.19
SHMT2-232ENST00000557487 IFT80Q9P2H3 777 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-232ENST00000557487 C16orf96A6NNT2 1141 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 SYCE1LA8MT33 242 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 CRCPO75575 148 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 CDH1P12830 882 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 MTHFD2P13995 350 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 TSPAN8P19075 237 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 MAP4P27816 1152 aaKnown RBP16.2■□□□□ 0.18
SHMT2-232ENST00000557487 CLCQ05315 142 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 NFATC3Q12968 1075 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 ANKS6Q68DC2 871 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 C16orf87Q6PH81 154 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 TXNDC11Q6PKC3 985 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 DCDC5Q6ZRR9 648 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 CTU1Q7Z7A3 348 aaKnown RBP16.2■□□□□ 0.18
SHMT2-232ENST00000557487 TMEM199Q8N511 208 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 TEX26Q8N6G2 289 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 MAGEE2Q8TD90 523 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-232ENST00000557487 BPIFB1Q8TDL5 484 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 TUBB1Q9H4B7 451 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 SUN2Q9UH99 717 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 ITGB1BP2Q9UKP3 347 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 DSEQ9UL01 958 aa16.2■□□□□ 0.18
SHMT2-232ENST00000557487 CCDC154A6NI56 674 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 IFRD1O00458 451 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-232ENST00000557487 STX16O14662 325 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 ATP6V1G1O75348 118 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 DEAF1O75398 565 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-232ENST00000557487 PRSS23O95084 383 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 MLYCDO95822 493 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 CYP11A1P05108 521 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 OCM2P0CE71 109 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 OCMP0CE72 109 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-232ENST00000557487 RHOQP17081 205 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 UGT1A1P22309 533 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 UGT1A4P22310 534 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 RPL10P27635 214 aaKnown RBP16.19■□□□□ 0.18
SHMT2-232ENST00000557487 UGT1A3P35503 534 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 UGT1A5P35504 534 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 CD86P42081 329 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 MLLT6P55198 1093 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-232ENST00000557487 EMX2Q04743 252 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 TAF2Q6P1X5 1199 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 LINC00299Q6ZSB3 139 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 FAM43BQ6ZT52 329 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-232ENST00000557487 KDELC2Q7Z4H8 507 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 DPP9Q86TI2 863 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 OR52K2Q8NGK3 314 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 ACDQ96AP0 544 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 ZFP42Q96MM3 310 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 ZNF599Q96NL3 588 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 SERPINB11Q96P15 392 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 TINF2Q9BSI4 451 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 LRRC3Q9BY71 257 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 DERL2Q9GZP9 239 aa16.19■□□□□ 0.18
SHMT2-232ENST00000557487 NT5MQ9NPB1 228 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms