RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ZSWIM9Q86XI8 627 aa26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 AHI1Q8N157 1196 aa26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 AFAP1L2Q8N4X5 818 aa26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 TEX9Q8N6V9 391 aa26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 CELF5Q8N6W0 485 aaKnown RBP26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 STAG3L4Q8TBR4 150 aa26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 ING5Q8WYH8 240 aa26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 ATOH8Q96SQ7 321 aa26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 PIDD1Q9HB75 910 aa26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 TAS2R1Q9NYW7 299 aa26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 TRMT6Q9UJA5 497 aaKnown RBP26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 FNDC3AQ9Y2H6 1198 aaKnown RBP26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 GOLGA8CPA6NN73 597 aa26.17■■□□□ 1.78
CCDC88C-205ENST00000553403 WASH3PC4AMC7 463 aa26.17■■□□□ 1.78
CCDC88C-205ENST00000553403 H3BMM5 538 aa26.17■■□□□ 1.78
CCDC88C-205ENST00000553403 GAPDHSO14556 408 aaPredicted RBP26.17■■□□□ 1.78
CCDC88C-205ENST00000553403 KERAO60938 352 aa26.17■■□□□ 1.78
CCDC88C-205ENST00000553403 CLDN7O95471 211 aa26.17■■□□□ 1.78
CCDC88C-205ENST00000553403 ITGALP20701 1170 aa26.17■■□□□ 1.78
CCDC88C-205ENST00000553403 ZNF678Q5SXM1 525 aa26.17■■□□□ 1.78
CCDC88C-205ENST00000553403 GPR153Q6NV75 609 aa26.17■■□□□ 1.78
CCDC88C-205ENST00000553403 TPRG1Q6ZUI0 275 aa26.17■■□□□ 1.78
CCDC88C-205ENST00000553403 ACAD11Q709F0 780 aa26.17■■□□□ 1.78
CCDC88C-205ENST00000553403 SMG7Q92540 1137 aaKnown RBP26.17■■□□□ 1.78
CCDC88C-205ENST00000553403 PHF21BQ96EK2 531 aa26.17■■□□□ 1.78
CCDC88C-205ENST00000553403 SCRN2Q96FV2 425 aa26.17■■□□□ 1.78
CCDC88C-205ENST00000553403 CADM1Q9BY67 442 aaKnown RBP26.17■■□□□ 1.78
CCDC88C-205ENST00000553403 GSTO2Q9H4Y5 243 aa26.17■■□□□ 1.78
CCDC88C-205ENST00000553403 TRPC5OSA6NMA1 111 aa26.16■■□□□ 1.78
CCDC88C-205ENST00000553403 PRMT5O14744 637 aaPredicted RBP26.16■■□□□ 1.78
CCDC88C-205ENST00000553403 GSC2O15499 205 aa26.16■■□□□ 1.78
CCDC88C-205ENST00000553403 RPS3P23396 243 aaKnown RBP eCLIP26.16■■□□□ 1.78
CCDC88C-205ENST00000553403 HERVK_113P63132 956 aa26.16■■□□□ 1.78
CCDC88C-205ENST00000553403 USP45Q70EL2 814 aa26.16■■□□□ 1.78
CCDC88C-205ENST00000553403 RAB44Q7Z6P3 723 aaPredicted RBP26.16■■□□□ 1.78
CCDC88C-205ENST00000553403 RBM23Q86U06 439 aaKnown RBP26.16■■□□□ 1.78
CCDC88C-205ENST00000553403 TMPRSS6Q8IU80 811 aa26.16■■□□□ 1.78
CCDC88C-205ENST00000553403 ERVK-6Q9BXR3 956 aa26.16■■□□□ 1.78
CCDC88C-205ENST00000553403 SHCBP1LQ9BZQ2 653 aa26.16■■□□□ 1.78
CCDC88C-205ENST00000553403 SLCO3A1Q9UIG8 710 aa26.16■■□□□ 1.78
CCDC88C-205ENST00000553403 FBXO10Q9UK96 956 aa26.16■■□□□ 1.78
CCDC88C-205ENST00000553403 CDYLQ9Y232 598 aa26.16■■□□□ 1.78
CCDC88C-205ENST00000553403 GBF1Q92538 1859 aa26.16■■□□□ 1.78
CCDC88C-205ENST00000553403 TRBV5-4A0A0C4DH59 114 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 B2RBV5 119 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 WFS1O76024 890 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 PRAMEF1O95521 474 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 BPIP17213 487 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 POLR2EP19388 210 aaKnown RBP26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 NCF2P19878 526 aaPredicted RBP26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 PRDX6P30041 224 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 SPAM1P38567 509 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 SH2D4BQ5SQS7 431 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 C9orf50Q5SZB4 431 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 FAM109BQ6ICB4 259 aaPredicted RBP26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 FAM151BQ6UXP7 276 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 DPY19L3Q6ZPD9 716 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 ADGRD2Q7Z7M1 963 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 ITFG1Q8TB96 612 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 OR52B2Q96RD2 323 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 MCCC1Q96RQ3 725 aaPredicted RBP26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 IL26Q9NPH9 171 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 ERVW-1Q9UQF0 538 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 NIPSNAP2O75323 286 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 ZNF7P17097 686 aaPredicted RBP26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 VASPP50552 380 aaPredicted RBP26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 MNAT1P51948 309 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 CBX2Q14781 532 aaPredicted RBP26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 GPR33Q49SQ1 333 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 UNC50Q53HI1 259 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 CRTC1Q6UUV9 634 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 SERPINA9Q86WD7 417 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 CD200R1Q8TD46 325 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 FAM136AQ96C01 138 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 ASB2Q96Q27 587 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 NUF2Q9BZD4 464 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 MMADHCQ9H3L0 296 aaPredicted RBP26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 ZDHHC6Q9H6R6 413 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 ASB8Q9H765 288 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 GTSE1Q9NYZ3 720 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 GALPQ9UBC7 116 aa26.15■■□□□ 1.78
CCDC88C-205ENST00000553403 ZNF106Q9H2Y7 1883 aaKnown RBP26.14■■□□□ 1.78
CCDC88C-205ENST00000553403 SYCE1LA8MT33 242 aa26.14■■□□□ 1.78
CCDC88C-205ENST00000553403 MTHFD2P13995 350 aa26.14■■□□□ 1.78
CCDC88C-205ENST00000553403 HNRNPLP14866 589 aaKnown RBP eCLIP26.14■■□□□ 1.78
CCDC88C-205ENST00000553403 SATB1Q01826 763 aa26.14■■□□□ 1.78
CCDC88C-205ENST00000553403 NFATC2Q13469 925 aa26.14■■□□□ 1.78
CCDC88C-205ENST00000553403 DHCR24Q15392 516 aa26.14■■□□□ 1.78
CCDC88C-205ENST00000553403 CUZD1Q86UP6 607 aa26.14■■□□□ 1.78
CCDC88C-205ENST00000553403 RBFAQ8N0V3 343 aa26.14■■□□□ 1.78
CCDC88C-205ENST00000553403 PTGR2Q8N8N7 351 aaPredicted RBP26.14■■□□□ 1.78
CCDC88C-205ENST00000553403 FAM13CQ8NE31 585 aa26.14■■□□□ 1.78
CCDC88C-205ENST00000553403 C1orf21Q9H246 121 aa26.14■■□□□ 1.78
CCDC88C-205ENST00000553403 BAIAP2L1Q9UHR4 511 aa26.14■■□□□ 1.78
CCDC88C-205ENST00000553403 TMCO1Q9UM00 188 aa26.14■■□□□ 1.78
CCDC88C-205ENST00000553403 MYOFQ9NZM1 2061 aa26.14■■□□□ 1.77
CCDC88C-205ENST00000553403 SCN8AQ9UQD0 1980 aa26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 GLYATL1P3A0A0U1RQE8 302 aa26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 NPIPB15A6NHN6 443 aaPredicted RBP26.13■■□□□ 1.77
CCDC88C-205ENST00000553403 E5RI56 91 aa26.13■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms