RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 HRH2P25021 359 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 GJA5P36382 358 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 CAPGP40121 348 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 CLCNKBP51801 687 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 PRSS12P56730 875 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 ADARB1P78563 741 aaKnown RBP5.4□□□□□ -1.54
LIMA1-212ENST00000552491 CDC42EP1Q00587 391 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 RELAQ04206 551 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 CD300CQ08708 224 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 BNIP2Q12982 314 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 SEMA3AQ14563 771 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 INPP5AQ14642 412 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 PCBP1Q15365 356 aaKnown RBP eCLIP5.4□□□□□ -1.54
LIMA1-212ENST00000552491 PFKFB4Q16877 469 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 ZNF829Q3KNS6 432 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-212ENST00000552491 ZIK1Q3SY52 487 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-212ENST00000552491 FUT11Q495W5 492 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 PRMT9Q6P2P2 845 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 BLOC1S3Q6QNY0 202 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 ABRAXAS1Q6UWZ7 409 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 KIAA2013Q8IYS2 634 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 MIER2Q8N344 545 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 DHRSXQ8N5I4 330 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 NAT16Q8N8M0 369 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 TERB1Q8NA31 727 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 ZBTB8BQ8NAP8 495 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-212ENST00000552491 OR6J1Q8NGC5 347 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 OR6P1Q8NGX9 317 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 CASP10Q92851 521 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 MYLPFQ96A32 169 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 VPS50Q96JG6 964 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 FCRL2Q96LA5 508 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-212ENST00000552491 TSPAN18Q96SJ8 248 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 TMEM209Q96SK2 561 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 ATP13A1Q9HD20 1204 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 VTA1Q9NP79 307 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 C8orf4Q9NR00 106 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 SMPD3Q9NY59 655 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-212ENST00000552491 IFT80Q9P2H3 777 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-212ENST00000552491 BLOC1S6Q9UL45 172 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 KCNH4Q9UQ05 1017 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 NDUFAF1Q9Y375 327 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 TIMM22Q9Y584 194 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 GPR45Q9Y5Y3 372 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 DOCK4Q8N1I0 1966 aa5.4□□□□□ -1.54
LIMA1-212ENST00000552491 DOCK3Q8IZD9 2030 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 FUOMA2VDF0 154 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 MBLAC1A4D2B0 266 aaPredicted RBP5.4□□□□□ -1.55
LIMA1-212ENST00000552491 TMEM221A6NGB7 291 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 J3KR12 359 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 UPK1AO00322 258 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 AZIN1O14977 448 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 IRAK2O43187 625 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 ADAM23O75077 832 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 SERPINB7O75635 380 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 KCNH1O95259 989 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 MYL3P08590 195 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 FGF4P08620 206 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 PORP16435 677 aaPredicted RBP5.4□□□□□ -1.55
LIMA1-212ENST00000552491 IL12AP29459 219 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 HOXC13P31276 330 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 CD86P42081 329 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 RPS9P46781 194 aaKnown RBP5.4□□□□□ -1.55
LIMA1-212ENST00000552491 NFKB2Q00653 900 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 DSC2Q02487 901 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 GNA12Q03113 381 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 LIPEQ05469 1076 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 SLC10A7Q0GE19 358 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 NFATC3Q12968 1075 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 AAK1Q2M2I8 961 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 DUSP28Q4G0W2 176 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 PAN2Q504Q3 1202 aaKnown RBP5.4□□□□□ -1.55
LIMA1-212ENST00000552491 TMTC4Q5T4D3 741 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 AFMIDQ63HM1 303 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 KANK2Q63ZY3 851 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 ANKRD34AQ69YU3 496 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 XAF1Q6GPH4 301 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 TMEM214Q6NUQ4 689 aaKnown RBP5.4□□□□□ -1.55
LIMA1-212ENST00000552491 SCIMPQ6UWF3 145 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 BTLAQ7Z6A9 289 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 ITIH5Q86UX2 942 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 ANKRD13AQ8IZ07 590 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 CENPSQ8N2Z9 138 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 SLC15A4Q8N697 577 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 OR13F1Q8NGS4 319 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 SNX19Q92543 992 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 BORCS5Q969J3 196 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 TUBGCP3Q96CW5 907 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 PABPC5Q96DU9 382 aaKnown RBP5.4□□□□□ -1.55
LIMA1-212ENST00000552491 TSPAN17Q96FV3 270 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 COX4I2Q96KJ9 171 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 TBATAQ96M53 351 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 PPP1R2P1Q96PQ5 205 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 SEPHS2Q99611 448 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 ALG2Q9H553 416 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 NTN4Q9HB63 628 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 ARNT2Q9HBZ2 717 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 ZFYVE28Q9HCC9 887 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 NT5MQ9NPB1 228 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 PFDN4Q9NQP4 134 aa5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms