RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 SGF29Q96ES7 293 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 CCDC74BQ96LY2 380 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 OR2M4Q96R27 311 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 RBM22Q9NW64 420 aaKnown RBP eCLIP8.42□□□□□ -1.06
USP28-215ENST00000545608 RCOR3Q9P2K3 495 aaPredicted RBP8.42□□□□□ -1.06
USP28-215ENST00000545608 CHKBQ9Y259 395 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 PCYT1BQ9Y5K3 369 aaPredicted RBP8.42□□□□□ -1.06
USP28-215ENST00000545608 BZW2Q9Y6E2 419 aaKnown RBP8.42□□□□□ -1.06
USP28-215ENST00000545608 ANKRD36A6QL64 1941 aa8.42□□□□□ -1.06
USP28-215ENST00000545608 GCN1Q92616 2671 aaKnown RBP8.41□□□□□ -1.06
USP28-215ENST00000545608 ARHGEF17Q96PE2 2063 aaPredicted RBP8.41□□□□□ -1.06
USP28-215ENST00000545608 IGHV1OR21-1A0A087WYE8 117 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 A0A1W2PQJ5 194 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 MYO1FO00160 1098 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 MATN3O15232 486 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 INPP4BO15327 924 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 CLDN7O95471 211 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 EML2O95834 649 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 SERPING1P05155 500 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 MPSTP25325 297 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 CSF2RBP32927 897 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 GJC1P36383 396 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 GPR3P46089 330 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 STC1P52823 247 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 EPHB1P54762 984 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 TAS2R40P59535 323 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 CYP4F2P78329 520 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 ZBED6P86452 979 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 NIPAL4Q0D2K0 466 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 SLC10A2Q12908 348 aaPredicted RBP8.41□□□□□ -1.06
USP28-215ENST00000545608 BIRC2Q13490 618 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 SQSTM1Q13501 440 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 CLPPQ16740 277 aaPredicted RBP8.41□□□□□ -1.06
USP28-215ENST00000545608 HADHQ16836 314 aaKnown RBP8.41□□□□□ -1.06
USP28-215ENST00000545608 FAM182AQ5T1J6 154 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 ALG1LQ6GMV1 187 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 ALKBH5Q6P6C2 394 aaKnown RBP8.41□□□□□ -1.06
USP28-215ENST00000545608 ZNF765Q7L2R6 523 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 LUZP1Q86V48 1076 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 ZNF761Q86XN6 746 aaPredicted RBP8.41□□□□□ -1.06
USP28-215ENST00000545608 NDUFAF2Q8N183 169 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.41□□□□□ -1.06
USP28-215ENST00000545608 HTR3CQ8WXA8 447 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 COX14Q96I36 57 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 TSGA13Q96PP4 275 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 CDK15Q96Q40 435 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 WDR24Q96S15 920 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 RIOK2Q9BVS4 552 aaKnown RBP8.41□□□□□ -1.06
USP28-215ENST00000545608 TDRD1Q9BXT4 1180 aaKnown RBP8.41□□□□□ -1.06
USP28-215ENST00000545608 B3GNT4Q9C0J1 378 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 POLR1EQ9GZS1 481 aaKnown RBP8.41□□□□□ -1.06
USP28-215ENST00000545608 CBX8Q9HC52 389 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 AKAP7Q9P0M2 348 aaPredicted RBP8.41□□□□□ -1.06
USP28-215ENST00000545608 TMEM9Q9P0T7 183 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 SEPT10Q9P0V9 454 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 CNOT6Q9ULM6 557 aaKnown RBP8.41□□□□□ -1.06
USP28-215ENST00000545608 CAPN11Q9UMQ6 739 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 NENFQ9UMX5 172 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 OAS3Q9Y6K5 1087 aaKnown RBP8.41□□□□□ -1.06
USP28-215ENST00000545608 BPTFQ12830 3046 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 MGAQ8IWI9 3026 aa8.41□□□□□ -1.06
USP28-215ENST00000545608 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.4□□□□□ -1.06
USP28-215ENST00000545608 HGSO14964 777 aaPredicted RBP8.4□□□□□ -1.06
USP28-215ENST00000545608 ZW10O43264 779 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 SLC28A2O43868 658 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 DNAJC6O75061 913 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 PROSCO94903 275 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 ASMTLO95671 621 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 ATP1A1P05023 1023 aaKnown RBP8.4□□□□□ -1.06
USP28-215ENST00000545608 HLA-DQB2P05538 268 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 THRAP10827 490 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 ZNF30P17039 623 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 ITGB6P18564 788 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 CES1P23141 567 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 CCNCP24863 283 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 CD82P27701 267 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 SCTRP47872 440 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 UBASH3AP57075 661 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 GBE1Q04446 702 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 NFATC3Q12968 1075 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 TRA2AQ13595 282 aaKnown RBP eCLIP8.4□□□□□ -1.06
USP28-215ENST00000545608 TBR1Q16650 682 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 IFI16Q16666 785 aaKnown RBP8.4□□□□□ -1.06
USP28-215ENST00000545608 ANKRD20A8PQ5CZ79 823 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 TIGD7Q6NT04 549 aaPredicted RBP8.4□□□□□ -1.06
USP28-215ENST00000545608 TMEM71Q6P5X7 295 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 NRSN1Q8IZ57 195 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 PQLC3Q8N755 202 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 KCTD6Q8NC69 237 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 LPCAT1Q8NF37 534 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 OR4D9Q8NGE8 314 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 EXD1Q8NHP7 514 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 ZNF564Q8TBZ8 553 aaPredicted RBP8.4□□□□□ -1.06
USP28-215ENST00000545608 SLC37A2Q8TED4 501 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 NKD1Q969G9 470 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 TAAR9Q96RI9 348 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 CDH19Q9H159 772 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 PCDH9Q9HC56 1237 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 ZNF358Q9NW07 568 aa8.4□□□□□ -1.06
USP28-215ENST00000545608 OCIAD1Q9NX40 245 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms