RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 DDX39BQ13838 428 aaKnown RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 KRT32Q14532 448 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 C16orf72Q14CZ0 275 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 CDK10Q15131 360 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 PTPRRQ15256 657 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 LTB4RQ15722 352 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 TRIM16LQ309B1 348 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 DNAL1Q4LDG9 190 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 ANKRD20A4Q4UJ75 823 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 KLHL12Q53G59 568 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 AGBL4Q5VU57 503 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 RETSATQ6NUM9 610 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 ZNF530Q6P9A1 599 aaPredicted RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 IYDQ6PHW0 289 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 RBM44Q6ZP01 1051 aaKnown RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 C11orf57Q6ZUT1 292 aaPredicted RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 TOM1L2Q6ZVM7 507 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 HEATR3Q7Z4Q2 680 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 TTC7BQ86TV6 843 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 RALGPS2Q86X27 583 aaPredicted RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 LIX1LQ8IVB5 337 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 NUDCD3Q8IVD9 361 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 SLC22A9Q8IVM8 553 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 MAPKAPK5Q8IW41 473 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 TAGAPQ8N103 731 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 CRYBG2Q8N1P7 616 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 ANKFN1Q8N957 763 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 OR4D10Q8NGI6 311 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 ZFP28Q8NHY6 868 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 KCTD4Q8WVF5 259 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 CAPSLQ8WWF8 208 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 PRPF31Q8WWY3 499 aaKnown RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 PYDC1Q8WXC3 89 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 STON2Q8WXE9 905 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 POMGNT1Q8WZA1 660 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 GTF3AQ92664 365 aaKnown RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 PTP4A1Q93096 173 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 PHKBQ93100 1093 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 RFT1Q96AA3 541 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 NTAN1Q96AB6 310 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 NMD3Q96D46 503 aaKnown RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 HES6Q96HZ4 224 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 HIST1H2AHQ96KK5 128 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 FAM227BQ96M60 508 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 WDR92Q96MX6 357 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 HIST1H2AJQ99878 128 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 DDX23Q9BUQ8 820 aaKnown RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 C1orf50Q9BV19 199 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 PPA2Q9H2U2 334 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 HIPK3Q9H422 1215 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 ZCCHC4Q9H5U6 513 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 C11orf49Q9H6J7 331 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 HPS4Q9NQG7 708 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 PLCXD1Q9NUJ7 323 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 DDX28Q9NUL7 540 aaKnown RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 MCM9Q9NXL9 1143 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 B3GNT2Q9NY97 397 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 GPRC5DQ9NZD1 345 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 KCND2Q9NZV8 630 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 UXTQ9UBK9 157 aaPredicted RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 ADD3Q9UEY8 706 aaKnown RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 LIMA1Q9UHB6 759 aaKnown RBP5.5□□□□□ -1.53
CD44-236ENST00000533222 IL19Q9UHD0 177 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 CYB5R1Q9UHQ9 305 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 RAB26Q9ULW5 256 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 TESMINQ9Y4I5 508 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 RIPK3Q9Y572 518 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 CDY2AQ9Y6F7 541 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 KCNE2Q9Y6J6 123 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 CEPT1Q9Y6K0 416 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 DGKBQ9Y6T7 804 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 PIAS3Q9Y6X2 628 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 PZPP20742 1482 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 ABCC10Q5T3U5 1492 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 MAST1Q9Y2H9 1570 aa5.5□□□□□ -1.53
CD44-236ENST00000533222 UTYO14607 1347 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 MAST3O60307 1309 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 CLUHO75153 1309 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 AOX1Q06278 1338 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 A0A1B0GVC2 190 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 C2orf78A6NCI8 922 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 MEI4A8MW99 385 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 H0YGN5 161 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 PODXLO00592 558 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 ABCD4O14678 606 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 TFECO14948 347 aaPredicted RBP5.49□□□□□ -1.53
CD44-236ENST00000533222 PRICKLE3O43900 615 aaPredicted RBP5.49□□□□□ -1.53
CD44-236ENST00000533222 GMDSO60547 372 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 SLC22A3O75751 556 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 OR7A10O76100 309 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 PIGNO95427 931 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 PSMG1O95456 288 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 PLATP00750 562 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 IFNA4P05014 189 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 QDPRP09417 244 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 TFPTP0C1Z6 253 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 HSMCR30P0CW71 290 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 SMIM18P0DKX4 95 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 CLUP10909 449 aa5.49□□□□□ -1.53
CD44-236ENST00000533222 CHN1P15882 459 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms