RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 FBXO8Q9NRD0 319 aa23.37■■□□□ 1.33
CPSF1-202ENST00000527827 VPS18Q9P253 973 aa23.37■■□□□ 1.33
CPSF1-202ENST00000527827 CHKBQ9Y259 395 aa23.37■■□□□ 1.33
CPSF1-202ENST00000527827 A6NCN8 305 aa23.36■■□□□ 1.33
CPSF1-202ENST00000527827 MFSD11O43934 449 aa23.36■■□□□ 1.33
CPSF1-202ENST00000527827 CLDN7O95471 211 aa23.36■■□□□ 1.33
CPSF1-202ENST00000527827 PRLP01236 227 aa23.36■■□□□ 1.33
CPSF1-202ENST00000527827 EPHB1P54762 984 aa23.36■■□□□ 1.33
CPSF1-202ENST00000527827 NFATC2Q13469 925 aa23.36■■□□□ 1.33
CPSF1-202ENST00000527827 IYDQ6PHW0 289 aa23.36■■□□□ 1.33
CPSF1-202ENST00000527827 CEACAM20Q6UY09 585 aa23.36■■□□□ 1.33
CPSF1-202ENST00000527827 CHST15Q7LFX5 561 aaPredicted RBP23.36■■□□□ 1.33
CPSF1-202ENST00000527827 UNC5BQ8IZJ1 945 aa23.36■■□□□ 1.33
CPSF1-202ENST00000527827 NIPA2Q8N8Q9 360 aa23.36■■□□□ 1.33
CPSF1-202ENST00000527827 NCSTNQ92542 709 aa23.36■■□□□ 1.33
CPSF1-202ENST00000527827 BTBD6Q96KE9 485 aa23.36■■□□□ 1.33
CPSF1-202ENST00000527827 TDRD1Q9BXT4 1180 aaKnown RBP23.36■■□□□ 1.33
CPSF1-202ENST00000527827 CD48P09326 243 aa23.35■■□□□ 1.33
CPSF1-202ENST00000527827 PRKAR1AP10644 381 aa23.35■■□□□ 1.33
CPSF1-202ENST00000527827 CASRP41180 1078 aa23.35■■□□□ 1.33
CPSF1-202ENST00000527827 GARSP41250 739 aaKnown RBP23.35■■□□□ 1.33
CPSF1-202ENST00000527827 CDC20Q12834 499 aa23.35■■□□□ 1.33
CPSF1-202ENST00000527827 RAVER1Q8IY67 606 aaKnown RBP23.35■■□□□ 1.33
CPSF1-202ENST00000527827 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP23.35■■□□□ 1.33
CPSF1-202ENST00000527827 FAM71BQ8TC56 605 aa23.35■■□□□ 1.33
CPSF1-202ENST00000527827 KIAA1143Q96AT1 154 aaPredicted RBP23.35■■□□□ 1.33
CPSF1-202ENST00000527827 ZPBPQ9BS86 351 aa23.35■■□□□ 1.33
CPSF1-202ENST00000527827 DNPEPQ9ULA0 475 aa23.35■■□□□ 1.33
CPSF1-202ENST00000527827 KCNK6Q9Y257 313 aa23.35■■□□□ 1.33
CPSF1-202ENST00000527827 TMEM184BQ9Y519 407 aaPredicted RBP23.35■■□□□ 1.33
CPSF1-202ENST00000527827 LRRK2Q5S007 2527 aa23.34■■□□□ 1.33
CPSF1-202ENST00000527827 FOXK1P85037 733 aa23.34■■□□□ 1.33
CPSF1-202ENST00000527827 ABHD18Q0P651 414 aa23.34■■□□□ 1.33
CPSF1-202ENST00000527827 GALNT2Q10471 571 aa23.34■■□□□ 1.33
CPSF1-202ENST00000527827 KRT81Q14533 505 aa23.34■■□□□ 1.33
CPSF1-202ENST00000527827 ARRDC2Q8TBH0 407 aa23.34■■□□□ 1.33
CPSF1-202ENST00000527827 SH3KBP1Q96B97 665 aa23.34■■□□□ 1.33
CPSF1-202ENST00000527827 LYSMD1Q96S90 227 aa23.34■■□□□ 1.33
CPSF1-202ENST00000527827 ZNF71Q9NQZ8 489 aaPredicted RBP23.34■■□□□ 1.33
CPSF1-202ENST00000527827 RBM22Q9NW64 420 aaKnown RBP eCLIP23.34■■□□□ 1.331e-7■□□□□ 9.5
CPSF1-202ENST00000527827 RCOR3Q9P2K3 495 aaPredicted RBP23.34■■□□□ 1.33
CPSF1-202ENST00000527827 RELNP78509 3460 aa23.34■■□□□ 1.33
CPSF1-202ENST00000527827 FADS2P1A8MWK0 482 aa23.33■■□□□ 1.33
CPSF1-202ENST00000527827 MATN3O15232 486 aa23.33■■□□□ 1.33
CPSF1-202ENST00000527827 STK17BO94768 372 aa23.33■■□□□ 1.33
CPSF1-202ENST00000527827 ACP5P13686 325 aa23.33■■□□□ 1.33
CPSF1-202ENST00000527827 CES1P23141 567 aa23.33■■□□□ 1.33
CPSF1-202ENST00000527827 OAS2P29728 719 aaKnown RBP23.33■■□□□ 1.33
CPSF1-202ENST00000527827 EPHA4P54764 986 aa23.33■■□□□ 1.33
CPSF1-202ENST00000527827 NIPAL4Q0D2K0 466 aa23.33■■□□□ 1.33
CPSF1-202ENST00000527827 IGFBP7Q16270 282 aa23.33■■□□□ 1.33
CPSF1-202ENST00000527827 HENMT1Q5T8I9 393 aaKnown RBP23.33■■□□□ 1.33
CPSF1-202ENST00000527827 NCBP2-AS2Q69YL0 99 aa23.33■■□□□ 1.33
CPSF1-202ENST00000527827 LYSMD3Q7Z3D4 306 aa23.33■■□□□ 1.33
CPSF1-202ENST00000527827 SLC9B2Q86UD5 537 aa23.33■■□□□ 1.33
CPSF1-202ENST00000527827 C9orf43Q8TAL5 461 aaPredicted RBP23.33■■□□□ 1.33
CPSF1-202ENST00000527827 EFHD1Q9BUP0 239 aa23.33■■□□□ 1.33
CPSF1-202ENST00000527827 THAP2Q9H0W7 228 aa23.33■■□□□ 1.33
CPSF1-202ENST00000527827 STN1Q9H668 368 aaKnown RBP23.33■■□□□ 1.33
CPSF1-202ENST00000527827 ANKMY1Q9P2S6 941 aa23.33■■□□□ 1.33
CPSF1-202ENST00000527827 ANAPC2Q9UJX6 822 aa23.33■■□□□ 1.33
CPSF1-202ENST00000527827 DLGAP3O95886 979 aa23.32■■□□□ 1.32
CPSF1-202ENST00000527827 MAN1A1P33908 653 aa23.32■■□□□ 1.32
CPSF1-202ENST00000527827 MAPK9P45984 424 aa23.32■■□□□ 1.32
CPSF1-202ENST00000527827 ZNF165P49910 485 aa23.32■■□□□ 1.32
CPSF1-202ENST00000527827 ARSEP51690 589 aa23.32■■□□□ 1.32
CPSF1-202ENST00000527827 TYRO3Q06418 890 aa23.32■■□□□ 1.32
CPSF1-202ENST00000527827 PAFAH1B3Q15102 231 aaKnown RBP23.32■■□□□ 1.32
CPSF1-202ENST00000527827 LPCAT1Q8NF37 534 aa23.32■■□□□ 1.32
CPSF1-202ENST00000527827 HERPUD2Q9BSE4 406 aa23.32■■□□□ 1.32
CPSF1-202ENST00000527827 TBC1D10AQ9BXI6 508 aa23.32■■□□□ 1.32
CPSF1-202ENST00000527827 RMI1Q9H9A7 625 aa23.32■■□□□ 1.32
CPSF1-202ENST00000527827 PCDH9Q9HC56 1237 aa23.32■■□□□ 1.32
CPSF1-202ENST00000527827 SIDT1Q9NXL6 827 aaKnown RBP23.32■■□□□ 1.32
CPSF1-202ENST00000527827 KLHL3Q9UH77 587 aa23.32■■□□□ 1.32
CPSF1-202ENST00000527827 IP6K2Q9UHH9 426 aa23.32■■□□□ 1.32
CPSF1-202ENST00000527827 ANAPC7Q9UJX3 599 aa23.32■■□□□ 1.32
CPSF1-202ENST00000527827 ZNF106Q9H2Y7 1883 aaKnown RBP23.31■■□□□ 1.32
CPSF1-202ENST00000527827 KIR2DS5A0A0G2JLQ3 304 aa23.31■■□□□ 1.32
CPSF1-202ENST00000527827 A0A0G2JNG1 304 aa23.31■■□□□ 1.32
CPSF1-202ENST00000527827 KIR2DS3K7RE56 304 aa23.31■■□□□ 1.32
CPSF1-202ENST00000527827 SNX2O60749 519 aa23.31■■□□□ 1.32
CPSF1-202ENST00000527827 F3P13726 295 aa23.31■■□□□ 1.32
CPSF1-202ENST00000527827 SPINT3P49223 89 aa23.31■■□□□ 1.32
CPSF1-202ENST00000527827 RPL26P61254 145 aaKnown RBP23.31■■□□□ 1.32
CPSF1-202ENST00000527827 UBAP2LQ14157 1087 aaKnown RBP23.31■■□□□ 1.32
CPSF1-202ENST00000527827 DPYSL3Q14195 570 aa23.31■■□□□ 1.32
CPSF1-202ENST00000527827 KIR2DS5Q14953 304 aa23.31■■□□□ 1.32
CPSF1-202ENST00000527827 DEFB109BQ30KR1 87 aa23.31■■□□□ 1.32
CPSF1-202ENST00000527827 CCDC122Q5T0U0 273 aa23.31■■□□□ 1.32
CPSF1-202ENST00000527827 HGSNATQ68CP4 663 aa23.31■■□□□ 1.32
CPSF1-202ENST00000527827 TIGD7Q6NT04 549 aaPredicted RBP23.31■■□□□ 1.32
CPSF1-202ENST00000527827 STARD8Q92502 1023 aa23.31■■□□□ 1.32
CPSF1-202ENST00000527827 FATE1Q969F0 183 aa23.31■■□□□ 1.32
CPSF1-202ENST00000527827 ABHD17AQ96GS6 310 aa23.31■■□□□ 1.32
CPSF1-202ENST00000527827 NAP1L5Q96NT1 182 aaPredicted RBP23.31■■□□□ 1.32
CPSF1-202ENST00000527827 TSGA13Q96PP4 275 aa23.31■■□□□ 1.32
CPSF1-202ENST00000527827 LDHAL6BQ9BYZ2 381 aaPredicted RBP23.31■■□□□ 1.32
CPSF1-202ENST00000527827 TRIT1Q9H3H1 467 aaKnown RBP23.31■■□□□ 1.32
CPSF1-202ENST00000527827 FAM83DQ9H4H8 585 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms