RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 P2RY2P41231 377 aa20.89■□□□□ 0.94
VPS28-208ENST00000527797 DCDC1P59894 354 aa20.89■□□□□ 0.94
VPS28-208ENST00000527797 IRF9Q00978 393 aa20.89■□□□□ 0.94
VPS28-208ENST00000527797 TFF2Q03403 129 aa20.89■□□□□ 0.94
VPS28-208ENST00000527797 CNTN1Q12860 1018 aa20.89■□□□□ 0.94
VPS28-208ENST00000527797 DBN1Q16643 649 aa20.89■□□□□ 0.94
VPS28-208ENST00000527797 N4BP2L1Q5TBK1 243 aaPredicted RBP20.89■□□□□ 0.94
VPS28-208ENST00000527797 ZNF776Q68DI1 518 aaPredicted RBP20.89■□□□□ 0.94
VPS28-208ENST00000527797 Q6ZVL8 140 aa20.89■□□□□ 0.94
VPS28-208ENST00000527797 LCA5Q86VQ0 697 aa20.89■□□□□ 0.94
VPS28-208ENST00000527797 RAVER1Q8IY67 606 aaKnown RBP20.89■□□□□ 0.94
VPS28-208ENST00000527797 DTX3LQ8TDB6 740 aa20.89■□□□□ 0.94
VPS28-208ENST00000527797 CD84Q9UIB8 345 aa20.89■□□□□ 0.94
VPS28-208ENST00000527797 AGAP14A8MT82 685 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 MID1O15344 667 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 SPINT1O43278 529 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 OR1I1O60431 355 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 TOP3BO95985 862 aaKnown RBP20.89■□□□□ 0.93
VPS28-208ENST00000527797 DHRS4L1P0CG22 281 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 HOXB2P14652 356 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 ZNF7P17097 686 aaPredicted RBP20.89■□□□□ 0.93
VPS28-208ENST00000527797 ACRV1P26436 265 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 ETV3P41162 512 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 LIG3P49916 1009 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 ADARP55265 1226 aaKnown RBP20.89■□□□□ 0.93
VPS28-208ENST00000527797 CDKN2DP55273 166 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 CCDC15Q0P6D6 951 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 ZNF460Q14592 562 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 ACOX1Q15067 660 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 TMEM52BQ4KMG9 183 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 KIAA1211LQ6NV74 962 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 CCDC91Q7Z6B0 441 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 TECPR1Q7Z6L1 1165 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 ULK4Q96C45 1275 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 MAGEB18Q96M61 343 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 WRAP53Q9BUR4 548 aaKnown RBP20.89■□□□□ 0.93
VPS28-208ENST00000527797 SPATA16Q9BXB7 569 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 CAMSAP3Q9P1Y5 1249 aaPredicted RBP20.89■□□□□ 0.93
VPS28-208ENST00000527797 NFKBIL1Q9UBC1 381 aaPredicted RBP20.89■□□□□ 0.93
VPS28-208ENST00000527797 COMMD10Q9Y6G5 202 aa20.89■□□□□ 0.93
VPS28-208ENST00000527797 SRRM3A6NNA2 597 aaPredicted RBP20.88■□□□□ 0.93
VPS28-208ENST00000527797 MAN2B1O00754 1011 aa20.88■□□□□ 0.93
VPS28-208ENST00000527797 ADAM23O75077 832 aa20.88■□□□□ 0.93
VPS28-208ENST00000527797 ESR1P03372 595 aa20.88■□□□□ 0.93
VPS28-208ENST00000527797 PKMP14618 531 aaKnown RBP20.88■□□□□ 0.93
VPS28-208ENST00000527797 GMPRP36959 345 aa20.88■□□□□ 0.93
VPS28-208ENST00000527797 PGGT1BP53609 377 aa20.88■□□□□ 0.93
VPS28-208ENST00000527797 CCDC153Q494R4 210 aa20.88■□□□□ 0.93
VPS28-208ENST00000527797 C16orf46Q6P387 395 aa20.88■□□□□ 0.93
VPS28-208ENST00000527797 TBC1D1Q86TI0 1168 aaPredicted RBP20.88■□□□□ 0.93
VPS28-208ENST00000527797 NRSN1Q8IZ57 195 aa20.88■□□□□ 0.93
VPS28-208ENST00000527797 RBFAQ8N0V3 343 aa20.88■□□□□ 0.93
VPS28-208ENST00000527797 PLD6Q8N2A8 252 aaKnown RBP20.88■□□□□ 0.93
VPS28-208ENST00000527797 NXPE1Q8N323 547 aa20.88■□□□□ 0.93
VPS28-208ENST00000527797 ARMC2Q8NEN0 867 aa20.88■□□□□ 0.93
VPS28-208ENST00000527797 BIRC8Q96P09 236 aa20.88■□□□□ 0.93
VPS28-208ENST00000527797 POPDC3Q9HBV1 291 aa20.88■□□□□ 0.93
VPS28-208ENST00000527797 GPAMQ9HCL2 828 aa20.88■□□□□ 0.93
VPS28-208ENST00000527797 TMEM216Q9P0N5 145 aa20.88■□□□□ 0.93
VPS28-208ENST00000527797 PCDHB1Q9Y5F3 818 aa20.88■□□□□ 0.93
VPS28-208ENST00000527797 C5orf42Q9H799 3197 aa20.87■□□□□ 0.93
VPS28-208ENST00000527797 SHISA7A6NL88 538 aa20.87■□□□□ 0.93
VPS28-208ENST00000527797 PRMT5O14744 637 aaPredicted RBP20.87■□□□□ 0.93
VPS28-208ENST00000527797 WNT9AO14904 365 aa20.87■□□□□ 0.93
VPS28-208ENST00000527797 RHOBTB1O94844 696 aa20.87■□□□□ 0.93
VPS28-208ENST00000527797 CA5AP35218 305 aa20.87■□□□□ 0.93
VPS28-208ENST00000527797 COPAP53621 1224 aa20.87■□□□□ 0.93
VPS28-208ENST00000527797 RPS14P62263 151 aaKnown RBP20.87■□□□□ 0.93
VPS28-208ENST00000527797 HSF5Q4G112 596 aaPredicted RBP20.87■□□□□ 0.93
VPS28-208ENST00000527797 ATP13A5Q4VNC0 1218 aa20.87■□□□□ 0.93
VPS28-208ENST00000527797 PIP5KL1Q5T9C9 394 aa20.87■□□□□ 0.93
VPS28-208ENST00000527797 AADATQ8N5Z0 425 aa20.87■□□□□ 0.93
VPS28-208ENST00000527797 CCDC63Q8NA47 563 aa20.87■□□□□ 0.93
VPS28-208ENST00000527797 COQ10AQ96MF6 247 aa20.87■□□□□ 0.93
VPS28-208ENST00000527797 C1QTNF1Q9BXJ1 281 aa20.87■□□□□ 0.93
VPS28-208ENST00000527797 CLPBQ9H078 707 aa20.87■□□□□ 0.93
VPS28-208ENST00000527797 P2RY12Q9H244 342 aa20.87■□□□□ 0.93
VPS28-208ENST00000527797 ZNF358Q9NW07 568 aa20.87■□□□□ 0.93
VPS28-208ENST00000527797 TAS2R13Q9NYV9 303 aa20.87■□□□□ 0.93
VPS28-208ENST00000527797 DUSP12Q9UNI6 340 aa20.87■□□□□ 0.93
VPS28-208ENST00000527797 RUVBL2Q9Y230 463 aaKnown RBP20.87■□□□□ 0.93
VPS28-208ENST00000527797 FADS3Q9Y5Q0 445 aa20.87■□□□□ 0.93
VPS28-208ENST00000527797 TCF20Q9UGU0 1960 aaKnown RBP20.87■□□□□ 0.93
VPS28-208ENST00000527797 GMNCA6NCL1 334 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 PLIN3O60664 434 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 RPS3P23396 243 aaKnown RBP eCLIP20.86■□□□□ 0.935e-7■■□□□ 13
VPS28-208ENST00000527797 DRD3P35462 400 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 SERPINB4P48594 390 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 ITIH4Q14624 930 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 MLF2Q15773 248 aaPredicted RBP20.86■□□□□ 0.93
VPS28-208ENST00000527797 ZNF284Q2VY69 593 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP20.86■□□□□ 0.93
VPS28-208ENST00000527797 CACUL1Q86Y37 369 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 HDDC3Q8N4P3 179 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 TRAM1L1Q8N609 369 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 CXorf40AQ8TE69 158 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 KCTD4Q8WVF5 259 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 SCAMP4Q969E2 229 aa20.86■□□□□ 0.93
VPS28-208ENST00000527797 RIOK2Q9BVS4 552 aaKnown RBP20.86■□□□□ 0.93
VPS28-208ENST00000527797 EPN3Q9H201 632 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms