RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 FEM1CQ96JP0 617 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 PPP1R2P1Q96PQ5 205 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 ATOH8Q96SQ7 321 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 CYP2S1Q96SQ9 504 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 DOLKQ9UPQ8 538 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 MUSKO15146 869 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 WISP3O95389 354 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 ATXN1LP0C7T5 689 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 FDXRP22570 491 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 RPS9P46781 194 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 TBX4P57082 545 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 NAA20P61599 178 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 MRPS6P82932 125 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 BNIP2Q12982 314 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 ATP6AP1Q15904 470 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 CXCL17Q6UXB2 119 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 KIAA2013Q8IYS2 634 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 TNIP2Q8NFZ5 429 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 EXOC2Q96KP1 924 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 PPM1MQ96MI6 270 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 RPRD1AQ96P16 312 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 CHID1Q9BWS9 393 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 ATP13A1Q9HD20 1204 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 ANAPC2Q9UJX6 822 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 PCDHA9Q9Y5H5 950 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 GPR45Q9Y5Y3 372 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 ZSWIM8A7E2V4 1837 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 CAPN15O75808 1086 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 PAPSS2O95340 614 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 LDLRP01130 860 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 CYBBP04839 570 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 CD52P31358 61 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 RFC2P35250 354 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 TNK2Q07912 1038 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 PPP1R8Q12972 351 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 TMTC4Q5T4D3 741 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 AFMIDQ63HM1 303 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 ABRAXAS1Q6UWZ7 409 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 THEM5Q8N1Q8 247 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 SEPT8Q92599 483 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 BIRC8Q96P09 236 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 CDK15Q96Q40 435 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 MTG1Q9BT17 334 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 ZYG11BQ9C0D3 744 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 HIPK3Q9H422 1215 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 SMPD3Q9NY59 655 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 OTOFQ9HC10 1997 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 A0A1W2PP18 115 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 MYADML2A6NDP7 307 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 TNFRSF10BO14763 440 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 ZNF182P17025 639 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 ELK4P28324 431 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 RPL9P32969 192 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 CDKN1CP49918 316 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 FSCN1Q16658 493 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 CYBRD1Q53TN4 286 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 MS4A13Q5J8X5 152 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 FBXL22Q6P050 247 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 PRMT9Q6P2P2 845 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 BBS5Q8N3I7 341 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 PACRGLQ8N7B6 248 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 GTF3C2Q8WUA4 911 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 RSPH1Q8WYR4 309 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 BIRC7Q96CA5 298 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 SLC30A3Q99726 388 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 SARS2Q9NP81 518 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 A0A0U1RQS6 177 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 ASPDHA6ND91 283 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 CCDC154A6NI56 674 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 H3BMQ9 156 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 BOLA2-SMG1P6H3BVE0 249 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 J3QRK9 145 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 MGEA5O60502 916 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 ECI2O75521 394 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 ZNF865P0CJ78 1059 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 NR4A1P22736 598 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 GRK4P32298 578 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 CAPGP40121 348 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 CCR3P51677 355 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 OR4D2P58180 307 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 NANOGP8Q6NSW7 305 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 SLC2A7Q6PXP3 512 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 CD300LGQ6UXG3 332 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 CFAP52Q8N1V2 620 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 UMODL1-AS1Q8N2C9 162 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 CDYL2Q8N8U2 506 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 OR4L1Q8NH43 312 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 FBXL8Q96CD0 374 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 COG8Q96MW5 612 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 MUS81Q96NY9 551 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 CCDC68Q9H2F9 335 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 NANOGQ9H9S0 305 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 LTB4R2Q9NPC1 389 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 CATSPERZQ9NTU4 200 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 BTN3A1O00481 513 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 SOAT2O75908 522 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 RASAL1O95294 804 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 C1RP00736 705 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 CHRNA1P02708 482 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms