RNA–Protein interactions for RNA: ENST00000504788.5

LMNB1-208, Transcript of lamin B1, human

TSL 2

Gene LMNB1, Length 1,801 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNB1-208	ENST00000504788	SLC31A1	O15431	190 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	UGT1A9	O60656	530 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	SRP72	O76094	671 aa	Known RBP	4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	FSBP	O95073	299 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	CRTAM	O95727	393 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	CEACAM5	P06731	702 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	F7	P08709	466 aa	Predicted RBP	4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	RHOXF2B	P0C7M4	288 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	GOLGA6D	P0CG33	693 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	TSHR	P16473	764 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	UGT1A6	P19224	532 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	UGT1A1	P22309	533 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	UGT1A4	P22310	534 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	SSTR1	P30872	391 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	UGT1A3	P35503	534 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	UGT1A5	P35504	534 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	CTSK	P43235	329 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	EPHB1	P54762	984 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	NXPH1	P58417	271 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	CDK3	Q00526	305 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	NHLH1	Q02575	133 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	EIF2B5	Q13144	721 aa	Known RBP	4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	CUL1	Q13616	776 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	SIM2	Q14190	667 aa	Predicted RBP	4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	FZD2	Q14332	565 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	CRYM	Q14894	314 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	LRRC14	Q15048	493 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	CHRNA6	Q15825	494 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	UAP1	Q16222	522 aa	Predicted RBP	4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	HIF1A	Q16665	826 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	SETMAR	Q53H47	684 aa	Predicted RBP	4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	ZNF789	Q5FWF6	425 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	PDPK2P	Q6A1A2	396 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	CCNI2	Q6ZMN8	369 aa	Predicted RBP	4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	DBX2	Q6ZNG2	339 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	SYT12	Q8IV01	421 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	GSPT2	Q8IYD1	628 aa	Known RBP	4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	TRAM1L1	Q8N609	369 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	DNAAF3	Q8N9W5	541 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	MFSD2A	Q8NA29	543 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	FBXO36	Q8NEA4	188 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	DDHD1	Q8NEL9	900 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	GPR150	Q8NGU9	434 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	CXorf40A	Q8TE69	158 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	AEN	Q8WTP8	325 aa	Known RBP	4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	BTN2A2	Q8WVV5	523 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	FOXJ1	Q92949	421 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	HDAC10	Q969S8	669 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	AP2M1	Q96CW1	435 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	NUS1	Q96E22	293 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	SPACA7	Q96KW9	195 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	BIRC8	Q96P09	236 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	RHOXF2	Q9BQY4	288 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	ZSCAN5A	Q9BUG6	496 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	GPR63	Q9BZJ6	419 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	FAM129A	Q9BZQ8	928 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	CDH19	Q9H159	772 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	SEMA4A	Q9H3S1	761 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	FAM83D	Q9H4H8	585 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	UGT1A7	Q9HAW7	530 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	UGT1A10	Q9HAW8	530 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	UGT1A8	Q9HAW9	530 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	FGF22	Q9HCT0	170 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	PARD6A	Q9NPB6	346 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	FAM114A2	Q9NRY5	505 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	GOLGA6A	Q9NYA3	693 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	EURL	Q9NYK6	297 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	BFAR	Q9NZS9	450 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	SMG5	Q9UPR3	1016 aa	Known RBP	4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	SLC17A4	Q9Y2C5	497 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	OR1A2	Q9Y585	309 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788		V9GYY5	206 aa	Predicted RBP	4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	CELSR3	Q9NYQ7	3312 aa		4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	ATXN2	Q99700	1313 aa	Known RBP	4.9	□□□□□ -1.62
LMNB1-208	ENST00000504788	GLYATL1P3	A0A0U1RQE8	302 aa		4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	TCRBV9S1A1T	A0A576	114 aa		4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	LNP1	A1A4G5	178 aa		4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	MAGEB16	A2A368	324 aa		4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	CCDC78	A2IDD5	438 aa		4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	GOLGA8CP	A6NN73	597 aa		4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	C2orf81	A6NN90	581 aa		4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	GOLGA8K	D6RF30	607 aa		4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	GOLGA8T	H3BQL2	631 aa		4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	CDX4	O14627	284 aa	Predicted RBP	4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	BCAT2	O15382	392 aa	Predicted RBP	4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	PIAS1	O75925	651 aa		4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	WISP3	O95389	354 aa	Predicted RBP	4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	PRAMEF1	O95521	474 aa		4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	GOT2	P00505	430 aa	Known RBP	4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	MYCLP1	P12525	358 aa	Predicted RBP	4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	PGAM1	P18669	254 aa		4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	GCA	P28676	217 aa		4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	SPAM1	P38567	509 aa		4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	CSNK1E	P49674	416 aa	Known RBP	4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	CTSC	P53634	463 aa		4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	ADAR	P55265	1226 aa	Known RBP	4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	KIAA1024L	P59773	190 aa		4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	YPEL5	P62699	121 aa		4.9	□□□□□ -1.63
LMNB1-208	ENST00000504788	PDE1B	Q01064	536 aa		4.9	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms