RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 IGSF9Q9P2J2 1179 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CD84Q9UIB8 345 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PTGES3LE9PB15 166 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GPR39O43194 453 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 NBNO60934 754 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 NR4A1P22736 598 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 WASP42768 502 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GSSP48637 474 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TAS2R39P59534 338 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CDK18Q07002 472 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 MTX3Q5HYI7 312 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TMEM198Q66K66 360 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SLC2A7Q6PXP3 512 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 BANPQ8N9N5 519 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SPPL2BQ8TCT7 592 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 BTN2A3PQ96KV6 586 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 C7orf26Q96N11 449 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 MYOCQ99972 504 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GBA3Q9H227 469 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PRPF19Q9UMS4 504 aaKnown RBP10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 Q9Y3F1 56 aa10.71□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TRIP11Q15643 1979 aa10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 A0A1W2PQ67 120 aa10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SLC38A8A6NNN8 435 aa10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CENPXA8MT69 81 aa10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CLDN25C9JDP6 229 aa10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 NEDD8-MDP1E9PL57 170 aa10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 KPNA3O00505 521 aaPredicted RBP10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ALOX12P18054 663 aa10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 POLR2EP19388 210 aaKnown RBP10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 KRT6CP48668 564 aa10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 KRR1Q13601 381 aaKnown RBP10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 DGUOKQ16854 277 aa10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RBM20Q5T481 1227 aaKnown RBP10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 BNIPLQ7Z465 357 aa10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 DHFR2Q86XF0 187 aa10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 UROC1Q96N76 676 aa10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 OSER1Q9NX31 292 aa10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 VPS51Q9UID3 782 aa10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 LTBP1Q14766 1721 aa10.71□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TLL1O43897 1013 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 GLUD2P49448 558 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 COPZ1P61923 177 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 HSPA14Q0VDF9 509 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 AGKQ53H12 422 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PAGE2BQ5JRK9 111 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CLEC6AQ6EIG7 209 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ABRAXAS1Q6UWZ7 409 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SZRD1Q7Z422 152 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 DNAJB7Q7Z6W7 309 aaPredicted RBP10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 NOL11Q9H8H0 719 aaKnown RBP10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 NCKIPSDQ9NZQ3 722 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SUN2Q9UH99 717 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SPEF1Q9Y4P9 236 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ASCC3Q8N3C0 2202 aaKnown RBP10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RGSL1A5PLK6 1076 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CCNKO75909 580 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 EOMESO95936 686 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ALPIP09923 528 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ST13P50502 369 aaKnown RBP10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SLC18A1P54219 525 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MLLT6P55198 1093 aaPredicted RBP10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CREB5Q02930 508 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TCEAL1Q15170 157 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MS4A13Q5J8X5 152 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 GRTP1Q5TC63 336 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SCD5Q86SK9 330 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SYTL1Q8IYJ3 562 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 LZTR1Q8N653 840 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CNTD1Q8N815 330 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RTL3Q8N8U3 475 aaKnown RBP10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 LRRC39Q96DD0 335 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 WDR6Q9NNW5 1121 aaKnown RBP10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TRMT6Q9UJA5 497 aaKnown RBP10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 GNPTGQ9UJJ9 305 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 AGO1Q9UL18 857 aaKnown RBP10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FGF10O15520 208 aaPredicted RBP10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 NPY2RP49146 381 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 KLF10Q13118 480 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ARHGEF7Q14155 803 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MBTPS1Q14703 1052 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PIK3R6Q5UE93 754 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 AGAP9Q5VTM2 703 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ALKAL1Q6UXT8 129 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SFRP1Q8N474 314 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ZNF781Q8N8C0 355 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ACVR1CQ8NER5 493 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 OR7A2PQ8NGA2 310 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TSPAN18Q96SJ8 248 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 WDR12Q9GZL7 423 aaKnown RBP10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SSU72Q9NP77 194 aaKnown RBP10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MID1IP1Q9NPA3 183 aa10.7□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CCRL2O00421 344 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FFAR3O14843 346 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 GPR42O15529 346 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SEC24AO95486 1093 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CDH2P19022 906 aaPredicted RBP10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 IFNA8P32881 189 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SLC1A2P43004 574 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 DEFB103AP81534 67 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms