RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 RAD51BO15315 384 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 VEGFDO43915 354 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 ASMTLO95671 621 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 BPIP17213 487 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 TPH1P17752 444 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 VCLP18206 1134 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 IGFALSP35858 605 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 CTSKP43235 329 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 ARL4CP56559 192 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 PRAMEP78395 509 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 ZNF423Q2M1K9 1284 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 UAP1L1Q3KQV9 507 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 AARS2Q5JTZ9 985 aaKnown RBP8.22□□□□□ -1.09
SF3A1-208ENST00000485618 LDLRAP1Q5SW96 308 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 IZUMO3Q5VZ72 239 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 ALS2CLQ60I27 953 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 DENND5AQ6IQ26 1287 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 C8orf74Q6P047 294 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 ZNF449Q6P9G9 518 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 ENPP7Q6UWV6 458 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 CERS6Q6ZMG9 384 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 HEATR4Q86WZ0 1026 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 FSTL5Q8N475 847 aaPredicted RBP8.22□□□□□ -1.09
SF3A1-208ENST00000485618 MINDY1Q8N5J2 469 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 OR13H1Q8NG92 308 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 OR4K2Q8NGD2 314 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 OR56A4Q8NGH8 313 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 ZNF398Q8TD17 642 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 LRRC39Q96DD0 335 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 ZNF514Q96K75 400 aaPredicted RBP8.22□□□□□ -1.09
SF3A1-208ENST00000485618 DUSP23Q9BVJ7 150 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 FAM129AQ9BZQ8 928 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 SLC32A1Q9H598 525 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 VPS37BQ9H9H4 285 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 EBF2Q9HAK2 575 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 MRM3Q9HC36 420 aaKnown RBP8.22□□□□□ -1.09
SF3A1-208ENST00000485618 TRIM39Q9HCM9 518 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 BPIFA1Q9NP55 256 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 MBNL1Q9NR56 388 aaKnown RBP8.22□□□□□ -1.09
SF3A1-208ENST00000485618 DNAAF2Q9NVR5 837 aaKnown RBP8.22□□□□□ -1.09
SF3A1-208ENST00000485618 NLE1Q9NVX2 485 aaPredicted RBP8.22□□□□□ -1.09
SF3A1-208ENST00000485618 DNAJC28Q9NX36 388 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 WHRNQ9P202 907 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 KLQ9UEF7 1012 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 CD84Q9UIB8 345 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 VPS9D1Q9Y2B5 631 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 FNDC3AQ9Y2H6 1198 aaKnown RBP8.22□□□□□ -1.09
SF3A1-208ENST00000485618 NEU2Q9Y3R4 380 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 OR1A2Q9Y585 309 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 SPO11Q9Y5K1 396 aa8.22□□□□□ -1.09
SF3A1-208ENST00000485618 FAM208BQ5VWN6 2430 aa8.21□□□□□ -1.09
SF3A1-208ENST00000485618 CABIN1Q9Y6J0 2220 aa8.21□□□□□ -1.09
SF3A1-208ENST00000485618 FASNP49327 2511 aaKnown RBP8.21□□□□□ -1.1
SF3A1-208ENST00000485618 MROH6A6NGR9 719 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 DNALI1O14645 258 aaPredicted RBP8.21□□□□□ -1.1
SF3A1-208ENST00000485618 TTI1O43156 1089 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 ZW10O43264 779 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 ZNF500O60304 480 aaPredicted RBP8.21□□□□□ -1.1
SF3A1-208ENST00000485618 PCDHGA12O60330 932 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 KCNJ13O60928 360 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 SRP72O76094 671 aaKnown RBP8.21□□□□□ -1.1
SF3A1-208ENST00000485618 PRAMEF1O95521 474 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 TTC4O95801 387 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 TOP3BO95985 862 aaKnown RBP8.21□□□□□ -1.1
SF3A1-208ENST00000485618 CSF2P04141 144 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 POLBP06746 335 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 C1SP09871 688 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 CEACAM1P13688 526 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 JUNDP17535 347 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 MSH3P20585 1137 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 CSRP1P21291 193 aaKnown RBP8.21□□□□□ -1.1
SF3A1-208ENST00000485618 PTGIRP43119 386 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 RPIAP49247 311 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 DRG2P55039 364 aaKnown RBP8.21□□□□□ -1.1
SF3A1-208ENST00000485618 SRP54P61011 504 aaKnown RBP8.21□□□□□ -1.1
SF3A1-208ENST00000485618 CDK3Q00526 305 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 CACNG1Q06432 222 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 ILF2Q12905 390 aaKnown RBP8.21□□□□□ -1.1
SF3A1-208ENST00000485618 LRP8Q14114 963 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 KCNJ11Q14654 390 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 CERCAMQ5T4B2 595 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 HENMT1Q5T8I9 393 aaKnown RBP8.21□□□□□ -1.1
SF3A1-208ENST00000485618 RNASEH2BQ5TBB1 312 aaKnown RBP8.21□□□□□ -1.1
SF3A1-208ENST00000485618 MRNIPQ6NTE8 343 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 LVRNQ6Q4G3 990 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 AFTPHQ6ULP2 937 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 SNX20Q7Z614 316 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 SDCCAG8Q86SQ7 713 aaPredicted RBP8.21□□□□□ -1.1
SF3A1-208ENST00000485618 PRUNE1Q86TP1 453 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 GKN2Q86XP6 184 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 GALNT13Q8IUC8 556 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 TTC30BQ8N4P2 665 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 GLIS1Q8NBF1 620 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 DEFB124Q8NES8 71 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 OR6P1Q8NGX9 317 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 ZCCHC14Q8WYQ9 949 aaKnown RBP8.21□□□□□ -1.1
SF3A1-208ENST00000485618 CPT1BQ92523 772 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 SCAMP4Q969E2 229 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 GLYATL1Q969I3 302 aa8.21□□□□□ -1.1
SF3A1-208ENST00000485618 FUBP1Q96AE4 644 aaKnown RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms