RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SUSD1Q6UWL2 747 aa5.16□□□□□ -1.58
UPF3B-203ENST00000478840 HAUS6Q7Z4H7 955 aa5.16□□□□□ -1.58
UPF3B-203ENST00000478840 SNX32Q86XE0 403 aa5.16□□□□□ -1.58
UPF3B-203ENST00000478840 CEP57Q86XR8 500 aa5.16□□□□□ -1.58
UPF3B-203ENST00000478840 AFAP1L1Q8TED9 768 aa5.16□□□□□ -1.58
UPF3B-203ENST00000478840 TMEM174Q8WUU8 243 aa5.16□□□□□ -1.58
UPF3B-203ENST00000478840 LINC00615Q96LM1 132 aaPredicted RBP5.16□□□□□ -1.58
UPF3B-203ENST00000478840 GFM1Q96RP9 751 aaKnown RBP5.16□□□□□ -1.58
UPF3B-203ENST00000478840 TMEM39BQ9GZU3 492 aa5.16□□□□□ -1.58
UPF3B-203ENST00000478840 ANKZF1Q9H8Y5 726 aa5.16□□□□□ -1.58
UPF3B-203ENST00000478840 CLK4Q9HAZ1 481 aaKnown RBP5.16□□□□□ -1.58
UPF3B-203ENST00000478840 PIH1D3Q9NQM4 214 aaKnown RBP5.16□□□□□ -1.58
UPF3B-203ENST00000478840 TMEM184CQ9NVA4 438 aa5.16□□□□□ -1.58
UPF3B-203ENST00000478840 LARSQ9P2J5 1176 aaKnown RBP5.16□□□□□ -1.58
UPF3B-203ENST00000478840 HACL1Q9UJ83 578 aa5.16□□□□□ -1.58
UPF3B-203ENST00000478840 TMEM184BQ9Y519 407 aaPredicted RBP5.16□□□□□ -1.58
UPF3B-203ENST00000478840 A0A1W2PPC1 479 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 PSMD14O00487 310 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 SPRY1O43609 319 aaPredicted RBP5.15□□□□□ -1.59
UPF3B-203ENST00000478840 LDB2O43679 373 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 ATP5BP06576 529 aaKnown RBP5.15□□□□□ -1.59
UPF3B-203ENST00000478840 C6P13671 934 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 FDPSP14324 419 aaKnown RBP5.15□□□□□ -1.59
UPF3B-203ENST00000478840 HOXD9P28356 352 aaPredicted RBP5.15□□□□□ -1.59
UPF3B-203ENST00000478840 FASLGP48023 281 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 ME1P48163 572 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 POLGP54098 1239 aaPredicted RBP5.15□□□□□ -1.59
UPF3B-203ENST00000478840 SRSF1Q07955 248 aaKnown RBP eCLIP5.15□□□□□ -1.59
UPF3B-203ENST00000478840 MYBPC2Q14324 1141 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 LETM2Q2VYF4 491 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 PAPD4Q6PIY7 484 aaKnown RBP5.15□□□□□ -1.59
UPF3B-203ENST00000478840 PET117Q6UWS5 81 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 SLC16A12Q6ZSM3 486 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 TPRG1Q6ZUI0 275 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 INTS8Q75QN2 995 aaKnown RBP5.15□□□□□ -1.59
UPF3B-203ENST00000478840 IQCHQ86VS3 1027 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 ANKRD13BQ86YJ7 626 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 ZNF713Q8N859 430 aaPredicted RBP5.15□□□□□ -1.59
UPF3B-203ENST00000478840 OR1J2Q8NGS2 313 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 MRPS27Q92552 414 aaKnown RBP5.15□□□□□ -1.59
UPF3B-203ENST00000478840 CITED2Q99967 270 aaPredicted RBP5.15□□□□□ -1.59
UPF3B-203ENST00000478840 GPATCH1Q9BRR8 931 aaKnown RBP5.15□□□□□ -1.59
UPF3B-203ENST00000478840 DESI2Q9BSY9 194 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 NUP85Q9BW27 656 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 DNAJC18Q9H819 358 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 TSPYL4Q9UJ04 414 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 RCOR1Q9UKL0 485 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.15□□□□□ -1.59
UPF3B-203ENST00000478840 SRPRBQ9Y5M8 271 aaKnown RBP5.15□□□□□ -1.59
UPF3B-203ENST00000478840 SQORQ9Y6N5 450 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 ZMYM2Q9UBW7 1377 aa5.15□□□□□ -1.59
UPF3B-203ENST00000478840 EDDM13A0A1B0GTR0 161 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 SYNCRIPO60506 623 aaKnown RBP5.14□□□□□ -1.59
UPF3B-203ENST00000478840 CREG1O75629 220 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 SOX30O94993 753 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 SIX3O95343 332 aaPredicted RBP5.14□□□□□ -1.59
UPF3B-203ENST00000478840 TGDSO95455 350 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 TRUB2O95900 331 aaKnown RBP5.14□□□□□ -1.59
UPF3B-203ENST00000478840 BCL10O95999 233 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 HNRNPH1P31943 449 aaKnown RBP5.14□□□□□ -1.59
UPF3B-203ENST00000478840 ACVRL1P37023 503 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 CCR10P46092 362 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 RALGDSQ12967 914 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 MTX1Q13505 466 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 TNIP1Q15025 636 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 MYLK3Q32MK0 819 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 FRG2Q64ET8 278 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 PARM1Q6UWI2 310 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 RBM15BQ8NDT2 890 aaKnown RBP5.14□□□□□ -1.59
UPF3B-203ENST00000478840 MPLKIPQ8TAP9 179 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 GDAP1Q8TB36 358 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 SETD6Q8TBK2 473 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 HM13Q8TCT9 377 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 TAS1R2Q8TE23 839 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 TEKT4Q8WW24 435 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 TRIB2Q92519 343 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 SECISBP2LQ93073 1101 aaKnown RBP5.14□□□□□ -1.59
UPF3B-203ENST00000478840 CRAMP1Q96RY5 1269 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 TMEM79Q9BSE2 394 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 HAUS8Q9BT25 410 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 PRSS22Q9GZN4 317 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 TMEM51Q9NW97 253 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 OR6C3Q9NZP0 311 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 SLC9A2Q9UBY0 812 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 STK39Q9UEW8 545 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 DBNLQ9UJU6 430 aaKnown RBP5.14□□□□□ -1.59
UPF3B-203ENST00000478840 TTC7AQ9ULT0 858 aaPredicted RBP5.14□□□□□ -1.59
UPF3B-203ENST00000478840 LIPGQ9Y5X9 500 aa5.14□□□□□ -1.59
UPF3B-203ENST00000478840 ASTN2O75129 1339 aaPredicted RBP5.14□□□□□ -1.59
UPF3B-203ENST00000478840 PSMA7O14818 248 aa5.13□□□□□ -1.59
UPF3B-203ENST00000478840 SLCO2B1O94956 709 aa5.13□□□□□ -1.59
UPF3B-203ENST00000478840 LINGO3P0C6S8 592 aa5.13□□□□□ -1.59
UPF3B-203ENST00000478840 VPREB1P12018 145 aa5.13□□□□□ -1.59
UPF3B-203ENST00000478840 HOXC13P31276 330 aa5.13□□□□□ -1.59
UPF3B-203ENST00000478840 TLX1P31314 330 aaPredicted RBP5.13□□□□□ -1.59
UPF3B-203ENST00000478840 TCF7P36402 384 aaPredicted RBP5.13□□□□□ -1.59
UPF3B-203ENST00000478840 PIGAP37287 484 aa5.13□□□□□ -1.59
UPF3B-203ENST00000478840 EIF2S3P41091 472 aaKnown RBP5.13□□□□□ -1.59
UPF3B-203ENST00000478840 NPY4RP50391 375 aa5.13□□□□□ -1.59
UPF3B-203ENST00000478840 ZP1P60852 638 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms