RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 SYCP1Q15431 976 aa17.01■□□□□ 0.31
VIM-204ENST00000478746 PPP1R15BQ5SWA1 713 aa17.01■□□□□ 0.31
VIM-204ENST00000478746 ARMC12Q5T9G4 340 aa17.01■□□□□ 0.31
VIM-204ENST00000478746 TP53INP2Q8IXH6 220 aa17.01■□□□□ 0.31
VIM-204ENST00000478746 NDUFAF2Q8N183 169 aa17.01■□□□□ 0.31
VIM-204ENST00000478746 PGBD5Q8N414 524 aa17.01■□□□□ 0.31
VIM-204ENST00000478746 EXD1Q8NHP7 514 aa17.01■□□□□ 0.31
VIM-204ENST00000478746 COX14Q96I36 57 aa17.01■□□□□ 0.31
VIM-204ENST00000478746 C9orf72Q96LT7 481 aa17.01■□□□□ 0.31
VIM-204ENST00000478746 OR6C1Q96RD1 312 aa17.01■□□□□ 0.31
VIM-204ENST00000478746 MCCC1Q96RQ3 725 aaPredicted RBP17.01■□□□□ 0.31
VIM-204ENST00000478746 KCTD15Q96SI1 283 aaPredicted RBP17.01■□□□□ 0.31
VIM-204ENST00000478746 HERPUD2Q9BSE4 406 aa17.01■□□□□ 0.31
VIM-204ENST00000478746 PADI1Q9ULC6 663 aa17.01■□□□□ 0.31
VIM-204ENST00000478746 TNRC6AQ8NDV7 1962 aaKnown RBP17■□□□□ 0.31
VIM-204ENST00000478746 MN1Q10571 1320 aaPredicted RBP17■□□□□ 0.31
VIM-204ENST00000478746 OR5K4A6NMS3 321 aa17■□□□□ 0.31
VIM-204ENST00000478746 DNAJC6O75061 913 aa17■□□□□ 0.31
VIM-204ENST00000478746 DNAJB5O75953 348 aa17■□□□□ 0.31
VIM-204ENST00000478746 NDUFA10O95299 355 aa17■□□□□ 0.31
VIM-204ENST00000478746 PGLSO95336 258 aa17■□□□□ 0.31
VIM-204ENST00000478746 KLK7P49862 253 aa17■□□□□ 0.31
VIM-204ENST00000478746 OGDHQ02218 1023 aa17■□□□□ 0.31
VIM-204ENST00000478746 PTSQ03393 145 aa17■□□□□ 0.31
VIM-204ENST00000478746 SEMA5AQ13591 1074 aa17■□□□□ 0.31
VIM-204ENST00000478746 IL11RAQ14626 422 aa17■□□□□ 0.31
VIM-204ENST00000478746 TCP11X2Q5H9J9 407 aa17■□□□□ 0.31
VIM-204ENST00000478746 PPP6R3Q5H9R7 873 aaPredicted RBP17■□□□□ 0.31
VIM-204ENST00000478746 LRRC66Q68CR7 880 aa17■□□□□ 0.31
VIM-204ENST00000478746 ZNF787Q6DD87 383 aa17■□□□□ 0.31
VIM-204ENST00000478746 ZNF765Q7L2R6 523 aa17■□□□□ 0.31
VIM-204ENST00000478746 BBS5Q8N3I7 341 aa17■□□□□ 0.31
VIM-204ENST00000478746 ELMO2Q96JJ3 720 aa17■□□□□ 0.31
VIM-204ENST00000478746 AGAP2Q99490 1192 aa17■□□□□ 0.31
VIM-204ENST00000478746 CASS4Q9NQ75 786 aa17■□□□□ 0.31
VIM-204ENST00000478746 FAM207AQ9NSI2 230 aaPredicted RBP17■□□□□ 0.31
VIM-204ENST00000478746 SAMSN1Q9NSI8 373 aaKnown RBP17■□□□□ 0.31
VIM-204ENST00000478746 CPNE7Q9UBL6 633 aa17■□□□□ 0.31
VIM-204ENST00000478746 PCSK1NQ9UHG2 260 aa17■□□□□ 0.31
VIM-204ENST00000478746 KCNK6Q9Y257 313 aa17■□□□□ 0.31
VIM-204ENST00000478746 PCDHGA6Q9Y5G7 932 aa17■□□□□ 0.31
VIM-204ENST00000478746 PCYT1BQ9Y5K3 369 aaPredicted RBP17■□□□□ 0.31
VIM-204ENST00000478746 MED13Q9UHV7 2174 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 KIR2DS5A0A0G2JLQ3 304 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 A0A0G2JNG1 304 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 KIR2DS3K7RE56 304 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 C9P02748 559 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 ATP1A1P05023 1023 aaKnown RBP16.99■□□□□ 0.31
VIM-204ENST00000478746 F3P13726 295 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 COL8A1P27658 744 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 CASP14P31944 242 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 ANP32AP39687 249 aaKnown RBP16.99■□□□□ 0.31
VIM-204ENST00000478746 SEPHS1P49903 392 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 PGDP52209 483 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 GFERP55789 205 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 MAXP61244 160 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 SH3BP2P78314 561 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 DNASE1L3Q13609 305 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 KIR2DS5Q14953 304 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 EIF2S3LQ2VIR3 472 aaKnown RBP16.99■□□□□ 0.31
VIM-204ENST00000478746 NADK2Q4G0N4 442 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 RALGPS1Q5JS13 557 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 AVL9Q8NBF6 648 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 PIH1D2Q8WWB5 315 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 MGME1Q9BQP7 344 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 SNRNP25Q9BV90 132 aaKnown RBP16.99■□□□□ 0.31
VIM-204ENST00000478746 RIOK2Q9BVS4 552 aaKnown RBP16.99■□□□□ 0.31
VIM-204ENST00000478746 TRIM55Q9BYV6 548 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 TAB2Q9NYJ8 693 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 VPS18Q9P253 973 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 LNPEPQ9UIQ6 1025 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 LRBAP50851 2863 aa16.99■□□□□ 0.31
VIM-204ENST00000478746 SHANK1Q9Y566 2161 aa16.98■□□□□ 0.31
VIM-204ENST00000478746 A6NCN8 305 aa16.98■□□□□ 0.31
VIM-204ENST00000478746 LILRA5A6NI73 299 aa16.98■□□□□ 0.31
VIM-204ENST00000478746 SPAG6O75602 509 aa16.98■□□□□ 0.31
VIM-204ENST00000478746 PEX11BO96011 259 aa16.98■□□□□ 0.31
VIM-204ENST00000478746 MT-ND3P03897 115 aa16.98■□□□□ 0.31
VIM-204ENST00000478746 ACP5P13686 325 aa16.98■□□□□ 0.31
VIM-204ENST00000478746 TYRP1P17643 537 aa16.98■□□□□ 0.31
VIM-204ENST00000478746 AMD1P17707 334 aa16.98■□□□□ 0.31
VIM-204ENST00000478746 PSMA2P25787 234 aa16.98■□□□□ 0.31
VIM-204ENST00000478746 GARSP41250 739 aaKnown RBP16.98■□□□□ 0.31
VIM-204ENST00000478746 HCAR3P49019 387 aa16.98■□□□□ 0.31
VIM-204ENST00000478746 MAMDC2Q7Z304 686 aaPredicted RBP16.98■□□□□ 0.31
VIM-204ENST00000478746 TGM7Q96PF1 710 aa16.98■□□□□ 0.31
VIM-204ENST00000478746 SLC25A23Q9BV35 468 aa16.98■□□□□ 0.31
VIM-204ENST00000478746 CWC15Q9P013 229 aaKnown RBP16.98■□□□□ 0.31
VIM-204ENST00000478746 EPHB6O15197 1021 aa16.97■□□□□ 0.31
VIM-204ENST00000478746 TOX3O15405 576 aaPredicted RBP16.97■□□□□ 0.31
VIM-204ENST00000478746 PDHA1P08559 390 aa16.97■□□□□ 0.31
VIM-204ENST00000478746 ZNF30P17039 623 aa16.97■□□□□ 0.31
VIM-204ENST00000478746 EEF1GP26641 437 aaKnown RBP16.97■□□□□ 0.31
VIM-204ENST00000478746 MCOLN2Q8IZK6 566 aa16.97■□□□□ 0.31
VIM-204ENST00000478746 ARFGAP1Q8N6T3 406 aa16.97■□□□□ 0.31
VIM-204ENST00000478746 PRR7Q8TB68 274 aa16.97■□□□□ 0.31
VIM-204ENST00000478746 CT55Q8WUE5 264 aa16.97■□□□□ 0.31
VIM-204ENST00000478746 NSMCE1Q8WV22 266 aa16.97■□□□□ 0.31
VIM-204ENST00000478746 SMIM14Q96QK8 99 aa16.97■□□□□ 0.31
VIM-204ENST00000478746 PEBP4Q96S96 227 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms