RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 VPS18Q9P253 973 aa22.43■■□□□ 1.18
USP4-208ENST00000464168 RCOR3Q9P2K3 495 aaPredicted RBP22.43■■□□□ 1.18
USP4-208ENST00000464168 TUBD1Q9UJT1 453 aa22.43■■□□□ 1.18
USP4-208ENST00000464168 DOPEY2Q9Y3R5 2298 aa22.42■■□□□ 1.18
USP4-208ENST00000464168 MATN3O15232 486 aa22.42■■□□□ 1.18
USP4-208ENST00000464168 CAPN5O15484 640 aaPredicted RBP22.42■■□□□ 1.18
USP4-208ENST00000464168 NKX2-8O15522 239 aa22.42■■□□□ 1.18
USP4-208ENST00000464168 MFSD11O43934 449 aa22.42■■□□□ 1.18
USP4-208ENST00000464168 CES1P23141 567 aa22.42■■□□□ 1.18
USP4-208ENST00000464168 CCR10P46092 362 aa22.42■■□□□ 1.18
USP4-208ENST00000464168 PPM1FP49593 454 aaPredicted RBP22.42■■□□□ 1.18
USP4-208ENST00000464168 NFATC2Q13469 925 aa22.42■■□□□ 1.18
USP4-208ENST00000464168 ANO6Q4KMQ2 910 aa22.42■■□□□ 1.18
USP4-208ENST00000464168 CCDC183Q5T5S1 534 aa22.42■■□□□ 1.18
USP4-208ENST00000464168 CHST15Q7LFX5 561 aaPredicted RBP22.42■■□□□ 1.18
USP4-208ENST00000464168 RAVER1Q8IY67 606 aaKnown RBP22.42■■□□□ 1.18
USP4-208ENST00000464168 ARRDC2Q8TBH0 407 aa22.42■■□□□ 1.18
USP4-208ENST00000464168 NCSTNQ92542 709 aa22.42■■□□□ 1.18
USP4-208ENST00000464168 CATSPER2Q96P56 530 aa22.42■■□□□ 1.18
USP4-208ENST00000464168 TDRD1Q9BXT4 1180 aaKnown RBP22.42■■□□□ 1.18
USP4-208ENST00000464168 NAT10Q9H0A0 1025 aaKnown RBP22.42■■□□□ 1.18
USP4-208ENST00000464168 THAP2Q9H0W7 228 aa22.42■■□□□ 1.18
USP4-208ENST00000464168 FBXO8Q9NRD0 319 aa22.42■■□□□ 1.18
USP4-208ENST00000464168 RBM22Q9NW64 420 aaKnown RBP eCLIP22.42■■□□□ 1.18
USP4-208ENST00000464168 IP6K2Q9UHH9 426 aa22.42■■□□□ 1.18
USP4-208ENST00000464168 DNPEPQ9ULA0 475 aa22.42■■□□□ 1.18
USP4-208ENST00000464168 A0A1B0GTH6 734 aa22.41■■□□□ 1.18
USP4-208ENST00000464168 A6NCN8 305 aa22.41■■□□□ 1.18
USP4-208ENST00000464168 MAP4P27816 1152 aaKnown RBP22.41■■□□□ 1.18
USP4-208ENST00000464168 ARSEP51690 589 aa22.41■■□□□ 1.18
USP4-208ENST00000464168 PAFAH1B3Q15102 231 aaKnown RBP22.41■■□□□ 1.18
USP4-208ENST00000464168 CCDC122Q5T0U0 273 aa22.41■■□□□ 1.18
USP4-208ENST00000464168 HGSNATQ68CP4 663 aa22.41■■□□□ 1.18
USP4-208ENST00000464168 TIPARPQ7Z3E1 657 aaKnown RBP22.41■■□□□ 1.18
USP4-208ENST00000464168 NLGN4XQ8N0W4 816 aa22.41■■□□□ 1.18
USP4-208ENST00000464168 NLGN4YQ8NFZ3 816 aaPredicted RBP22.41■■□□□ 1.18
USP4-208ENST00000464168 GBP4Q96PP9 640 aa22.41■■□□□ 1.18
USP4-208ENST00000464168 LYSMD1Q96S90 227 aa22.41■■□□□ 1.18
USP4-208ENST00000464168 BPIFA3Q9BQP9 254 aa22.41■■□□□ 1.18
USP4-208ENST00000464168 GPN2Q9H9Y4 310 aaPredicted RBP22.41■■□□□ 1.18
USP4-208ENST00000464168 ANAPC7Q9UJX3 599 aa22.41■■□□□ 1.18
USP4-208ENST00000464168 KCNK6Q9Y257 313 aa22.41■■□□□ 1.18
USP4-208ENST00000464168 LOC101059948A0A1B0GTJ6 334 aa22.4■■□□□ 1.18
USP4-208ENST00000464168 ZNF165P49910 485 aa22.4■■□□□ 1.18
USP4-208ENST00000464168 RPL26P61254 145 aaKnown RBP22.4■■□□□ 1.18
USP4-208ENST00000464168 SRSF1Q07955 248 aaKnown RBP eCLIP22.4■■□□□ 1.18
USP4-208ENST00000464168 NIPAL4Q0D2K0 466 aa22.4■■□□□ 1.18
USP4-208ENST00000464168 SKIDA1Q1XH10 827 aa22.4■■□□□ 1.18
USP4-208ENST00000464168 NCBP2-AS2Q69YL0 99 aa22.4■■□□□ 1.18
USP4-208ENST00000464168 CEACAM20Q6UY09 585 aa22.4■■□□□ 1.18
USP4-208ENST00000464168 UNC5BQ8IZJ1 945 aa22.4■■□□□ 1.18
USP4-208ENST00000464168 FATE1Q969F0 183 aa22.4■■□□□ 1.18
USP4-208ENST00000464168 TSGA13Q96PP4 275 aa22.4■■□□□ 1.18
USP4-208ENST00000464168 ZPBPQ9BS86 351 aa22.4■■□□□ 1.18
USP4-208ENST00000464168 NUP85Q9BW27 656 aa22.4■■□□□ 1.18
USP4-208ENST00000464168 APMAPQ9HDC9 416 aa22.4■■□□□ 1.18
USP4-208ENST00000464168 AMACRQ9UHK6 382 aa22.4■■□□□ 1.18
USP4-208ENST00000464168 RPL26L1Q9UNX3 145 aaKnown RBP22.4■■□□□ 1.18
USP4-208ENST00000464168 TTLL3Q9Y4R7 772 aa22.4■■□□□ 1.18
USP4-208ENST00000464168 ZFC3H1O60293 1989 aaKnown RBP22.39■■□□□ 1.18
USP4-208ENST00000464168 FADS2P1A8MWK0 482 aa22.39■■□□□ 1.17
USP4-208ENST00000464168 CYP1A2P05177 515 aa22.39■■□□□ 1.17
USP4-208ENST00000464168 ACP5P13686 325 aa22.39■■□□□ 1.17
USP4-208ENST00000464168 CCNCP24863 283 aa22.39■■□□□ 1.17
USP4-208ENST00000464168 SPINT3P49223 89 aa22.39■■□□□ 1.17
USP4-208ENST00000464168 DPYSL3Q14195 570 aa22.39■■□□□ 1.17
USP4-208ENST00000464168 IFI16Q16666 785 aaKnown RBP22.39■■□□□ 1.17
USP4-208ENST00000464168 ATP13A4Q4VNC1 1196 aa22.39■■□□□ 1.17
USP4-208ENST00000464168 HENMT1Q5T8I9 393 aaKnown RBP22.39■■□□□ 1.17
USP4-208ENST00000464168 TIGD7Q6NT04 549 aaPredicted RBP22.39■■□□□ 1.17
USP4-208ENST00000464168 LYSMD3Q7Z3D4 306 aa22.39■■□□□ 1.17
USP4-208ENST00000464168 LPCAT1Q8NF37 534 aa22.39■■□□□ 1.17
USP4-208ENST00000464168 LRRN4Q8WUT4 740 aa22.39■■□□□ 1.17
USP4-208ENST00000464168 KIAA1143Q96AT1 154 aaPredicted RBP22.39■■□□□ 1.17
USP4-208ENST00000464168 SH3KBP1Q96B97 665 aa22.39■■□□□ 1.17
USP4-208ENST00000464168 HERPUD2Q9BSE4 406 aa22.39■■□□□ 1.17
USP4-208ENST00000464168 EPN3Q9H201 632 aa22.39■■□□□ 1.17
USP4-208ENST00000464168 FAM83DQ9H4H8 585 aa22.39■■□□□ 1.17
USP4-208ENST00000464168 RMI1Q9H9A7 625 aa22.39■■□□□ 1.17
USP4-208ENST00000464168 PCDH9Q9HC56 1237 aa22.39■■□□□ 1.17
USP4-208ENST00000464168 TMEM184BQ9Y519 407 aaPredicted RBP22.39■■□□□ 1.17
USP4-208ENST00000464168 C1orf232A0A0U1RR37 186 aa22.38■■□□□ 1.17
USP4-208ENST00000464168 SMTNL1A8MU46 457 aa22.38■■□□□ 1.17
USP4-208ENST00000464168 SNX2O60749 519 aa22.38■■□□□ 1.17
USP4-208ENST00000464168 PRKAR1AP10644 381 aa22.38■■□□□ 1.17
USP4-208ENST00000464168 EPHA4P54764 986 aa22.38■■□□□ 1.17
USP4-208ENST00000464168 NR1I3Q14994 352 aa22.38■■□□□ 1.17
USP4-208ENST00000464168 FIGNQ5HY92 759 aa22.38■■□□□ 1.17
USP4-208ENST00000464168 SLC9B2Q86UD5 537 aa22.38■■□□□ 1.17
USP4-208ENST00000464168 STN1Q9H668 368 aaKnown RBP22.38■■□□□ 1.17
USP4-208ENST00000464168 CPNE7Q9UBL6 633 aa22.38■■□□□ 1.17
USP4-208ENST00000464168 KIR2DS5A0A0G2JLQ3 304 aa22.37■■□□□ 1.17
USP4-208ENST00000464168 A0A0G2JNG1 304 aa22.37■■□□□ 1.17
USP4-208ENST00000464168 KIR2DS3K7RE56 304 aa22.37■■□□□ 1.17
USP4-208ENST00000464168 MYO1FO00160 1098 aa22.37■■□□□ 1.17
USP4-208ENST00000464168 STK17BO94768 372 aa22.37■■□□□ 1.17
USP4-208ENST00000464168 HLA-DQB2P05538 268 aa22.37■■□□□ 1.17
USP4-208ENST00000464168 F3P13726 295 aa22.37■■□□□ 1.17
USP4-208ENST00000464168 CA4P22748 312 aa22.37■■□□□ 1.17
USP4-208ENST00000464168 MAN1A1P33908 653 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms