RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 APPL2Q8NEU8 664 aa4.24□□□□□ -1.73
VPS29-202ENST00000447578 ASB5Q8WWX0 329 aa4.24□□□□□ -1.73
VPS29-202ENST00000447578 PRPF31Q8WWY3 499 aaKnown RBP4.24□□□□□ -1.73
VPS29-202ENST00000447578 KAT2BQ92831 832 aa4.24□□□□□ -1.73
VPS29-202ENST00000447578 SLC25A28Q96A46 364 aa4.24□□□□□ -1.73
VPS29-202ENST00000447578 LRRC59Q96AG4 307 aaKnown RBP4.24□□□□□ -1.73
VPS29-202ENST00000447578 ZNF653Q96CK0 615 aa4.24□□□□□ -1.73
VPS29-202ENST00000447578 TEFMQ96QE5 360 aaKnown RBP4.24□□□□□ -1.73
VPS29-202ENST00000447578 ZPBPQ9BS86 351 aa4.24□□□□□ -1.73
VPS29-202ENST00000447578 LRRCC1Q9C099 1032 aa4.24□□□□□ -1.73
VPS29-202ENST00000447578 CXorf56Q9H5V9 222 aa4.24□□□□□ -1.73
VPS29-202ENST00000447578 SLC6A13Q9NSD5 602 aa4.24□□□□□ -1.73
VPS29-202ENST00000447578 ARGLU1Q9NWB6 273 aaPredicted RBP4.24□□□□□ -1.73
VPS29-202ENST00000447578 GRHL1Q9NZI5 618 aa4.24□□□□□ -1.73
VPS29-202ENST00000447578 CNOT8Q9UFF9 292 aaKnown RBP4.24□□□□□ -1.73
VPS29-202ENST00000447578 FBXO40Q9UH90 709 aa4.24□□□□□ -1.73
VPS29-202ENST00000447578 ZNF112Q9UJU3 913 aa4.24□□□□□ -1.73
VPS29-202ENST00000447578 EXOC6BQ9Y2D4 811 aa4.24□□□□□ -1.73
VPS29-202ENST00000447578 FAM96BQ9Y3D0 163 aa4.24□□□□□ -1.73
VPS29-202ENST00000447578 PTRH2Q9Y3E5 179 aaKnown RBP4.24□□□□□ -1.73
VPS29-202ENST00000447578 DLG5Q8TDM6 1919 aa4.24□□□□□ -1.73
VPS29-202ENST00000447578 FMN2Q9NZ56 1722 aa4.24□□□□□ -1.73
VPS29-202ENST00000447578 NPHP4O75161 1426 aaPredicted RBP4.23□□□□□ -1.73
VPS29-202ENST00000447578 ADGRL3Q9HAR2 1447 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 hCG_1809904A0A1W2PP81 198 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 A0A1W2PPE2 198 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 A0A1W2PR64 198 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 C2CD4BA6NLJ0 364 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 PRSS44E7EML9 344 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 IFNL4K9M1U5 179 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 SCAMP1O15126 338 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 INPPL1O15357 1258 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 SEC14L5O43304 696 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 MSI1O43347 362 aaKnown RBP4.23□□□□□ -1.73
VPS29-202ENST00000447578 SLC25A12O75746 678 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 REC8O95072 547 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 NFATC1O95644 943 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 DDAH2O95865 285 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 UBTFL1P0CB47 393 aaPredicted RBP4.23□□□□□ -1.73
VPS29-202ENST00000447578 T-ENOLP0DO92 83 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 TMEM11P17152 192 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 CHRNA5P30532 468 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 PIK3CAP42336 1068 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 SLC15A1P46059 708 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 PPP5CP53041 499 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 GALCP54803 685 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 F2RL1P55085 397 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 TEFQ10587 303 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 IKQ13123 557 aaPredicted RBP4.23□□□□□ -1.73
VPS29-202ENST00000447578 GALNT3Q14435 633 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 FGFBP1Q14512 234 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 COG2Q14746 738 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 ME3Q16798 604 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 TCP11X2Q5H9J9 407 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 ADALQ6DHV7 355 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 ZNF530Q6P9A1 599 aaPredicted RBP4.23□□□□□ -1.73
VPS29-202ENST00000447578 IL27RAQ6UWB1 636 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 DENND5BQ6ZUT9 1274 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 ADGRA1Q86SQ6 560 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 TDRPQ86YL5 185 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 FAM47BQ8NA70 645 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 OR52N4Q8NGI2 321 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 MPLKIPQ8TAP9 179 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 PIGKQ92643 395 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 PABPC5Q96DU9 382 aaKnown RBP4.23□□□□□ -1.73
VPS29-202ENST00000447578 CCDC34Q96HJ3 373 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 BBS4Q96RK4 519 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 ABHD1Q96SE0 405 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 SRSF8Q9BRL6 282 aaKnown RBP4.23□□□□□ -1.73
VPS29-202ENST00000447578 NUF2Q9BZD4 464 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 ERVMER34-1Q9H9K5 563 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.23□□□□□ -1.73
VPS29-202ENST00000447578 TMEM45AQ9NWC5 275 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 PLK2Q9NYY3 685 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 SLC8A2Q9UPR5 921 aa4.23□□□□□ -1.73
VPS29-202ENST00000447578 UTYO14607 1347 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 LRRC37A3O60309 1634 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.22□□□□□ -1.73
VPS29-202ENST00000447578 FAM237AA0A1B0GTK4 181 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 OR2A25A4D2G3 310 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 C4orf47A7E2U8 309 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 CDRT15L2A8MXV6 281 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 FAM157AC9JC47 383 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 RNMTO43148 476 aaKnown RBP4.22□□□□□ -1.73
VPS29-202ENST00000447578 SLC25A17O43808 307 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 HS6ST1O60243 411 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 NDUFS3O75489 264 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 SURF6O75683 361 aaKnown RBP4.22□□□□□ -1.73
VPS29-202ENST00000447578 PLAUP00749 431 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 TFP02787 698 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 TUBBP07437 444 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 QDPRP09417 244 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 PTPN2P17706 415 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 MX1P20591 662 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 EDN2P20800 178 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 KLRC2P26717 231 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 CDAP32320 146 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 CAMPP49913 170 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 LIG4P49917 911 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 STAT2P52630 851 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms