RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 RMDN1Q96DB5 314 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 RMND5BQ96G75 393 aaPredicted RBP11.75□□□□□ -0.53
CD44-209ENST00000433892 RPL10LQ96L21 214 aaKnown RBP11.75□□□□□ -0.53
CD44-209ENST00000433892 TRIB3Q96RU7 358 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 TCF12Q99081 682 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 HAUS8Q9BT25 410 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 ANKRD60Q9BZ19 345 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 CRISPLD1Q9H336 500 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 PDFQ9HBH1 243 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 TAS2R13Q9NYV9 303 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 IL37Q9NZH6 218 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 GALPQ9UBC7 116 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 GABRQQ9UN88 632 aa11.75□□□□□ -0.53
CD44-209ENST00000433892 FAM92AA1XBS5 289 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 INPPL1O15357 1258 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 SEPT4O43236 478 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 MATN4O95460 622 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 NDST3O95803 873 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 IGLV3-27P01718 113 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 IDO1P14902 403 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 ZNF23P17027 643 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 TACR2P21452 398 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 MAGEA11P43364 429 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 RGRP47804 291 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 MAPKAPK2P49137 400 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 SCNN1BP51168 640 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 CDH15P55291 814 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 CRHR2Q13324 411 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 ADRM1Q16186 407 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 FAM171A1Q5VUB5 890 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 ANKS6Q68DC2 871 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 PRMT9Q6P2P2 845 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 BLOC1S3Q6QNY0 202 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 SCIMPQ6UWF3 145 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 ARHGAP22Q7Z5H3 698 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 TFAP2CQ92754 450 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 ESAMQ96AP7 390 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 GPR21Q99679 349 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 SLC30A3Q99726 388 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 SPON2Q9BUD6 331 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 DERL2Q9GZP9 239 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 CCDC68Q9H2F9 335 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 SYTL2Q9HCH5 934 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 SLC52A3Q9NQ40 469 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 PNPLA3Q9NST1 481 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 OLA1Q9NTK5 396 aaKnown RBP11.74□□□□□ -0.53
CD44-209ENST00000433892 GID8Q9NWU2 228 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 FNDC3AQ9Y2H6 1198 aaKnown RBP11.74□□□□□ -0.53
CD44-209ENST00000433892 GPR45Q9Y5Y3 372 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 PLXNA3P51805 1871 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 LCHNA4D1U4 455 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 NPEPPSL1A6NEC2 478 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 AQP12BA6NM10 295 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 BTN3A1O00481 513 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 ENPP3O14638 875 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 ARPC2O15144 300 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 TLR5O60602 858 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 NDUFS3O75489 264 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 BAIAP3O94812 1187 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 MTHFD1P11586 935 aaKnown RBP11.74□□□□□ -0.53
CD44-209ENST00000433892 HSD17B1P14061 328 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 CES1P23141 567 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 PSMA4P25789 261 aaKnown RBP11.74□□□□□ -0.53
CD44-209ENST00000433892 ZNF140P52738 457 aaPredicted RBP11.74□□□□□ -0.53
CD44-209ENST00000433892 RAD51Q06609 339 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 INPP5AQ14642 412 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 GPR162Q16538 588 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 TRIM71Q2Q1W2 868 aaKnown RBP11.74□□□□□ -0.53
CD44-209ENST00000433892 RABL3Q5HYI8 236 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 UGT3A1Q6NUS8 523 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 BORAQ6PGQ7 559 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 SLC24A5Q71RS6 500 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 GLT6D1Q7Z4J2 308 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 EPHX4Q8IUS5 362 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 AQP12AQ8IXF9 295 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 FUBP1Q96AE4 644 aaKnown RBP11.74□□□□□ -0.53
CD44-209ENST00000433892 FAM193BQ96PV7 902 aaPredicted RBP11.74□□□□□ -0.53
CD44-209ENST00000433892 ACOX2Q99424 681 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 ZBED2Q9BTP6 218 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 TRIM15Q9C019 465 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 INTS10Q9NVR2 710 aaKnown RBP11.74□□□□□ -0.53
CD44-209ENST00000433892 NLE1Q9NVX2 485 aaPredicted RBP11.74□□□□□ -0.53
CD44-209ENST00000433892 ACTR3BQ9P1U1 418 aa11.74□□□□□ -0.53
CD44-209ENST00000433892 FAM155AB1AL88 458 aaPredicted RBP11.73□□□□□ -0.53
CD44-209ENST00000433892 F5H5T6 163 aa11.73□□□□□ -0.53
CD44-209ENST00000433892 DLGAP1O14490 977 aa11.73□□□□□ -0.53
CD44-209ENST00000433892 HNRNPRO43390 633 aaKnown RBP11.73□□□□□ -0.53
CD44-209ENST00000433892 CYBBP04839 570 aa11.73□□□□□ -0.53
CD44-209ENST00000433892 IL10P22301 178 aa11.73□□□□□ -0.53
CD44-209ENST00000433892 HOXD9P28356 352 aaPredicted RBP11.73□□□□□ -0.53
CD44-209ENST00000433892 SLC6A4P31645 630 aa11.73□□□□□ -0.53
CD44-209ENST00000433892 CASP2P42575 452 aa11.73□□□□□ -0.53
CD44-209ENST00000433892 NFYCQ13952 458 aa11.73□□□□□ -0.53
CD44-209ENST00000433892 BTG3Q14201 252 aaPredicted RBP11.73□□□□□ -0.53
CD44-209ENST00000433892 PTPRNQ16849 979 aa11.73□□□□□ -0.53
CD44-209ENST00000433892 FUT11Q495W5 492 aa11.73□□□□□ -0.53
CD44-209ENST00000433892 IRAK1BP1Q5VVH5 260 aa11.73□□□□□ -0.53
CD44-209ENST00000433892 LCN8Q6JVE9 175 aa11.73□□□□□ -0.53
CD44-209ENST00000433892 CMTR2Q8IYT2 770 aaKnown RBP11.73□□□□□ -0.53
CD44-209ENST00000433892 FIBCD1Q8N539 461 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms